Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   BKN48_RS01545 Genome accession   NZ_CP017676
Coordinates   261013..261816 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain VV2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 256013..266816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS01515 (BKN48_01515) glpQB 257151..257882 (-) 732 WP_070547520.1 glycerophosphodiester phosphodiesterase -
  BKN48_RS01520 (BKN48_01520) yqiI 257961..258581 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase family protein -
  BKN48_RS01525 (BKN48_01525) - 258601..258897 (-) 297 WP_014480225.1 hypothetical protein -
  BKN48_RS21005 (BKN48_01530) - 259205..259357 (+) 153 WP_122060483.1 hypothetical protein -
  BKN48_RS01535 (BKN48_01535) yqiG 259430..260548 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  BKN48_RS01545 (BKN48_01545) spo0A 261013..261816 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  BKN48_RS01555 (BKN48_01555) spoIVB 262092..263372 (-) 1281 WP_070547521.1 SpoIVB peptidase -
  BKN48_RS01560 (BKN48_01560) recN 263547..265277 (-) 1731 WP_070547522.1 DNA repair protein RecN Machinery gene
  BKN48_RS01565 (BKN48_01565) argR 265314..265763 (-) 450 WP_014114358.1 arginine repressor ArgR -
  BKN48_RS01570 (BKN48_01570) yqxC 265861..266706 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=201457 BKN48_RS01545 WP_003226427.1 261013..261816(-) (spo0A) [Bacillus subtilis strain VV2]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=201457 BKN48_RS01545 WP_003226427.1 261013..261816(-) (spo0A) [Bacillus subtilis strain VV2]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment