Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   CHF17_RS02510 Genome accession   NZ_CP022537
Coordinates   426565..427599 (+) Length   344 a.a.
NCBI ID   WP_000732710.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 874391     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 421565..432599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF17_RS02470 (CHF17_00488) tsaE 421640..422083 (+) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  CHF17_RS02475 (CHF17_00489) - 422076..422597 (+) 522 WP_000043149.1 GNAT family N-acetyltransferase -
  CHF17_RS02480 (CHF17_00490) - 422606..423913 (+) 1308 WP_000708161.1 LCP family protein -
  CHF17_RS02485 (CHF17_00491) - 423977..424273 (-) 297 WP_000690175.1 hypothetical protein -
  CHF17_RS02490 (CHF17_00492) - 424270..424689 (-) 420 WP_000368099.1 HIT family protein -
  CHF17_RS02495 (CHF17_00493) - 425025..425528 (+) 504 WP_000773459.1 hypothetical protein -
  CHF17_RS02500 - 425580..425766 (-) 187 Protein_413 hypothetical protein -
  CHF17_RS02505 (CHF17_00494) pptA 425838..426563 (+) 726 WP_000912314.1 ABC transporter ATP-binding protein Regulator
  CHF17_RS02510 (CHF17_00495) pptB 426565..427599 (+) 1035 WP_000732710.1 ABC transporter permease Regulator
  CHF17_RS02515 (CHF17_00496) ccrZ 427657..428457 (+) 801 WP_000155920.1 cell cycle regulator CcrZ -
  CHF17_RS02520 (CHF17_00497) trmB 428447..429082 (+) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  CHF17_RS02530 (CHF17_00499) rimP 429571..430047 (+) 477 WP_041971671.1 ribosome maturation factor RimP -
  CHF17_RS02535 (CHF17_00500) nusA 430083..431234 (+) 1152 WP_000032295.1 transcription termination factor NusA -
  CHF17_RS02540 (CHF17_00501) - 431256..431552 (+) 297 WP_001140526.1 YlxR family protein -
  CHF17_RS02545 (CHF17_00502) - 431545..431847 (+) 303 WP_001065560.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40316.74 Da        Isoelectric Point: 10.4543

>NTDB_id=201394 CHF17_RS02510 WP_000732710.1 426565..427599(+) (pptB) [Streptococcus agalactiae strain 874391]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGEIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVVQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQN
LNWDAAINHEQERKQAILKFFSLFTNVKGISTSVKRRSFLDVILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDIILIRELKPV
ILLIVLMLIVTEYYIPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=201394 CHF17_RS02510 WP_000732710.1 426565..427599(+) (pptB) [Streptococcus agalactiae strain 874391]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAATGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTTGTTATATCAGTATAGCCAGTTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCGTGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGAAATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTGTTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGTTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTGGTGATAACTTACAAGGTAAAGGTCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGGCTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAGGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGTTATTTTAAAACTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACTTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACCATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ATTATTAGCTTTAGGTCACCATTTTGATTATCAATACATGAATCAGCTCTATCCAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTGTTATCATATGCTGTGACAGTAATTGATATCATACTTATAAGAGAATTGAAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGAAGATGATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(147-330)

Bacterial ABC transporter protein EcsB (EcsB)

(2-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.965

100

0.48
  pptB Streptococcus thermophilus LMD-9

47.674

100

0.477