Detailed information NTG0020136

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: SSU05_0389
• Genome accession: CP000407
• Coordinates: 372679..373740 (+)
• Length: 353 a.a.
• NCBI ID: ABP89356.1
• Uniprot ID: -
• Organism: Streptococcus suis 05ZYH33
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 367679..378740

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSU05_0384	-	368673..368849 (-)	177	ABP89350.1	hypothetical protein	-
SSU05_0385	-	370938..371444 (+)	507	ABP89352.1	hypothetical protein	-
SSU05_0386	-	371422..371559 (+)	138	ABP89353.1	hypothetical protein	-
SSU05_0387	-	371556..371858 (+)	303	ABP89354.1	hypothetical protein	-
SSU05_0388	-	372162..372374 (+)	213	ABP89355.1	N-formylmethionyl-tRNA deformylase	-
SSU05_0389	clpC	372679..373740 (+)	1062	ABP89356.1	ATPases with chaperone activity, ATP-binding subunit	Regulator
SSU05_0390	clpE	373721..374473 (+)	753	ABP89357.1	ATPases with chaperone activity, ATP-binding subunit	Regulator
SSU05_0391	clpE	374496..374780 (+)	285	ABP89358.1	ATPases with chaperone activity, ATP-binding subunit	Regulator
SSU05_0392	-	374963..376057 (+)	1095	ABP89359.1	4-alpha-glucanotransferase	-
SSU05_0393	-	376039..376473 (+)	435	ABP89360.1	4-alpha-glucanotransferase	-
SSU05_0394	-	376457..378730 (+)	2274	ABP89361.1	Glucan phosphorylase	-

Sequence

Protein

• Length: 353 a.a.
• Molecular weight: 38713.40 Da
• Isoelectric Point: 4.7716

>NTDB_id=20136 SSU05_0389 ABP89356.1 372679..373740(+) (clpC) [Streptococcus suis 05ZYH33]
MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEFAMYRQTGRLPQTEEVAQTQAKGQIKSDGILAKLGRN
LTQDAREGKLDPVIGRNKEIQETSEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTIHK
NAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHHNIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQH
PVTDIQTLEAEMAEAKQLQLEAAEKEDYDKSLE

Nucleotide

• Length: 1062 bp

>NTDB_id=20136 SSU05_0389 ABP89356.1 372679..373740(+) (clpC) [Streptococcus suis 05ZYH33]
ATGAACAACAATTTCAATAACTTTAACAATATGGACGACATTTTCAATCAACTCATGGGCAACATGGGTGGCTACAGCAC
AGAACGTCGCCGTTATTCTATCAATGGGCGTGAAGTGACACCAGAAGAATTTGCTATGTACCGTCAGACTGGTCGCCTGC
CACAGACAGAAGAAGTGGCTCAAACACAGGCTAAAGGTCAGATAAAGTCAGACGGAATTCTTGCAAAACTTGGTCGCAAT
TTGACACAAGATGCGCGTGAAGGTAAGTTGGATCCAGTCATTGGACGAAACAAGGAAATCCAAGAAACCTCTGAAATCCT
AGCTCGCCGTACGAAAAATAATCCTGTTTTGGTCGGTGATGCTGGTGTCGGAAAGACAGCGGTAGTAGAAGGATTGGCTC
AAGCCATTGTCAATGGTGATGTGCCAGCAGCCATTAAGAACAAGGAAATCATCTCCATCGACATTTCAGGCTTGGAGGCT
GGGACTCAGTATCGTGGAGCTTTTGAGGAAAATGTGCAGAATCTTGTGGATGAAGTCAAAAAAGCTGGAAATATCATTCT
CTTCTTTGATGAAATTCATCAGATTTTGGGAGCTGGTAGCACTGGCGGAGACTCAGGTTCCAAGGGTTTAGCGGATATTC
TCAAACCAGCTTTATCCCGTGGGGAATTGACGGTTATCGGTGCCACTACACAGGACGAATACCGCAATACTATTCACAAG
AATGCTGCTCTGGCTCGTCGTTTCAATGAAGTCAAGGTCAATGCTCCGTCCGCAGAGGACACCTACCAGATTTTGAAAGG
GATTAAGCCGCTTTATGAAGCCCACCACAATATTGAATTGCCAGATGAGGTTTTGAGAGCTGCGGTTGATTATTCCGTCC
AATATATTCCACAACGTAGCTTGCCTGATAAGGCTATTGACCTAGTCGATGTGACCGCTGCACATTTGGCTGCACAACAT
CCTGTGACAGATATTCAGACCTTAGAAGCAGAAATGGCTGAGGCAAAACAGTTGCAGTTGGAAGCAGCTGAAAAAGAGGA
TTATGACAAAAGCCTTGAATGA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (257-349)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	45.272	98.867	0.448
clpE	Streptococcus mutans UA159	49.827	81.87	0.408
clpE	Streptococcus pneumoniae Rx1	48.973	82.72	0.405
clpE	Streptococcus pneumoniae D39	48.973	82.72	0.405
clpE	Streptococcus pneumoniae TIGR4	48.973	82.72	0.405
clpE	Streptococcus pneumoniae R6	48.973	82.72	0.405
clpC	Bacillus subtilis subsp. subtilis str. 168	47.5	79.32	0.377
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	45.745	79.887	0.365
clpC	Streptococcus pneumoniae TIGR4	46.377	78.187	0.363
clpC	Streptococcus pneumoniae Rx1	46.377	78.187	0.363
clpC	Streptococcus pneumoniae D39	46.377	78.187	0.363