Detailed information
Bioinformatically predicted
Overview
| Name | clpE | Type | Regulator |
| Locus tag | SSU05_0391 | Genome accession | CP000407 |
| Coordinates | 374496..374780 (+) | Length | 94 a.a. |
| NCBI ID | ABP89358.1 | Uniprot ID | - |
| Organism | Streptococcus suis 05ZYH33 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 369496..379780
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSU05_0385 | - | 370938..371444 (+) | 507 | ABP89352.1 | hypothetical protein | - |
| SSU05_0386 | - | 371422..371559 (+) | 138 | ABP89353.1 | hypothetical protein | - |
| SSU05_0387 | - | 371556..371858 (+) | 303 | ABP89354.1 | hypothetical protein | - |
| SSU05_0388 | - | 372162..372374 (+) | 213 | ABP89355.1 | N-formylmethionyl-tRNA deformylase | - |
| SSU05_0389 | clpC | 372679..373740 (+) | 1062 | ABP89356.1 | ATPases with chaperone activity, ATP-binding subunit | Regulator |
| SSU05_0390 | clpE | 373721..374473 (+) | 753 | ABP89357.1 | ATPases with chaperone activity, ATP-binding subunit | Regulator |
| SSU05_0391 | clpE | 374496..374780 (+) | 285 | ABP89358.1 | ATPases with chaperone activity, ATP-binding subunit | Regulator |
| SSU05_0392 | - | 374963..376057 (+) | 1095 | ABP89359.1 | 4-alpha-glucanotransferase | - |
| SSU05_0393 | - | 376039..376473 (+) | 435 | ABP89360.1 | 4-alpha-glucanotransferase | - |
| SSU05_0394 | - | 376457..378730 (+) | 2274 | ABP89361.1 | Glucan phosphorylase | - |
| SSU05_0395 | - | 378958..379665 (-) | 708 | ABP89362.1 | Transcriptional regulator | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10671.24 Da Isoelectric Point: 4.5517
>NTDB_id=20138 SSU05_0391 ABP89358.1 374496..374780(+) (clpE) [Streptococcus suis 05ZYH33]
MDKDDLKAIVELLLAQVNNTLAKKGIQLTVTEAAKEFLMEEGYDKAMGARPLRRVIENQIRDKVTDFYLDHVDVKYLEAD
VVDGSIQIKEQSFA
MDKDDLKAIVELLLAQVNNTLAKKGIQLTVTEAAKEFLMEEGYDKAMGARPLRRVIENQIRDKVTDFYLDHVDVKYLEAD
VVDGSIQIKEQSFA
Nucleotide
Download Length: 285 bp
>NTDB_id=20138 SSU05_0391 ABP89358.1 374496..374780(+) (clpE) [Streptococcus suis 05ZYH33]
TTGGATAAAGATGATCTCAAAGCCATTGTAGAATTACTCTTGGCCCAGGTCAATAATACCCTGGCGAAGAAAGGCATCCA
ATTAACGGTAACGGAAGCTGCCAAAGAATTCTTGATGGAAGAAGGCTATGACAAGGCCATGGGAGCCCGTCCTCTGCGCC
GTGTGATTGAAAATCAGATTCGTGATAAGGTGACGGATTTCTATTTGGATCATGTTGATGTCAAATATCTGGAAGCGGAT
GTGGTTGATGGAAGCATCCAAATAAAAGAGCAAAGCTTTGCTTAA
TTGGATAAAGATGATCTCAAAGCCATTGTAGAATTACTCTTGGCCCAGGTCAATAATACCCTGGCGAAGAAAGGCATCCA
ATTAACGGTAACGGAAGCTGCCAAAGAATTCTTGATGGAAGAAGGCTATGACAAGGCCATGGGAGCCCGTCCTCTGCGCC
GTGTGATTGAAAATCAGATTCGTGATAAGGTGACGGATTTCTATTTGGATCATGTTGATGTCAAATATCTGGAAGCGGAT
GTGGTTGATGGAAGCATCCAAATAAAAGAGCAAAGCTTTGCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpE | Streptococcus pneumoniae Rx1 |
50 |
95.745 |
0.479 |
| clpE | Streptococcus pneumoniae D39 |
50 |
95.745 |
0.479 |
| clpE | Streptococcus pneumoniae R6 |
50 |
95.745 |
0.479 |
| clpE | Streptococcus pneumoniae TIGR4 |
50 |
95.745 |
0.479 |
| clpE | Streptococcus mutans UA159 |
50 |
95.745 |
0.479 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
46.739 |
97.872 |
0.457 |