Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   BKM66_RS10305 Genome accession   NZ_CP017666
Coordinates   2136197..2137393 (+) Length   398 a.a.
NCBI ID   WP_044668907.1    Uniprot ID   A0AAD0KWB0
Organism   Streptococcus suis strain 0061     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2131197..2142393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS10265 (BKM66_10010) - 2131514..2132752 (+) 1239 WP_105183997.1 replication initiation factor domain-containing protein -
  BKM66_RS10270 (BKM66_10015) - 2132809..2133147 (+) 339 WP_105183998.1 DUF771 domain-containing protein -
  BKM66_RS10275 (BKM66_10020) - 2133210..2134331 (+) 1122 WP_105183999.1 site-specific integrase -
  BKM66_RS10295 (BKM66_10040) - 2134836..2135519 (-) 684 WP_105184000.1 YoaK family protein -
  BKM66_RS10300 (BKM66_10045) rlmH 2135544..2136023 (-) 480 WP_105184001.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  BKM66_RS10305 (BKM66_10050) htrA 2136197..2137393 (+) 1197 WP_044668907.1 trypsin-like peptidase domain-containing protein Regulator
  BKM66_RS10310 (BKM66_10055) spo0J 2137454..2138218 (+) 765 WP_044693492.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 41838.88 Da        Isoelectric Point: 4.5454

>NTDB_id=201327 BKM66_RS10305 WP_044668907.1 2136197..2137393(+) (htrA) [Streptococcus suis strain 0061]
MERIPYMKKYLKFAILFVIGFFGGLIGALSASFFQPQVQQANSTITSVSNVQYNNETSTTKAVEKVQNAVVSVINYQKSA
NNSLGAIFGNIESSDELAVAGEGSGVIYKKDGQYAYVVTNTHVINNAEKIDILLASGEKISGELVGSDTYSDIAVIKISA
DKVTAVAEFADSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQSEDGQTISTNAIQTDTAINPGNSGGPLIN
IQGQVIGITSSKITSSSVSSSGVAVEGMGFAIPANDAVAIINQLEKAGKVSRPALGVHMVNLTTLSTSQLEKAGLSNTEL
TSGVVIVSTQSGLPADGKLETFDVITEIDGETIQNKSDLQSALYKHQIGDTITVTYYRNNQKQTVDIKLTHSTEELSE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=201327 BKM66_RS10305 WP_044668907.1 2136197..2137393(+) (htrA) [Streptococcus suis strain 0061]
ATGGAAAGGATTCCTTATATGAAAAAATATTTGAAATTTGCGATTTTATTTGTAATTGGATTTTTTGGGGGTCTTATCGG
GGCCTTATCAGCCTCTTTCTTCCAACCACAGGTTCAACAAGCAAATTCTACTATCACTAGTGTCAGCAATGTTCAATACA
ATAATGAAACTTCCACCACAAAAGCTGTAGAGAAAGTACAAAATGCTGTTGTGTCTGTTATTAATTACCAAAAGTCAGCC
AACAATAGTCTTGGTGCTATCTTTGGAAATATTGAATCATCTGACGAACTAGCTGTTGCTGGAGAGGGGTCTGGGGTTAT
CTATAAAAAAGATGGTCAATATGCCTATGTTGTGACAAATACGCATGTCATTAATAACGCAGAAAAGATTGATATTCTTT
TAGCATCTGGAGAAAAAATCAGCGGTGAACTCGTTGGTTCCGATACCTATTCTGATATAGCTGTTATAAAAATATCAGCA
GATAAAGTCACTGCTGTTGCTGAATTTGCTGATTCCGATACAATTAAAGTTGGAGAAACTGCTATCGCAATTGGTAGTCC
TCTAGGTAGCGTCTACGCTAATACAGTTACTCAAGGTATTATTTCTAGCCTAAGTCGGACAGTTACTTCACAATCAGAAG
ATGGTCAAACAATCTCAACCAACGCTATTCAAACCGATACGGCTATCAACCCCGGAAACTCTGGAGGACCATTGATTAAT
ATCCAAGGACAAGTTATTGGTATCACCTCTAGCAAAATCACCTCAAGTTCTGTAAGTAGCTCAGGTGTGGCTGTAGAAGG
GATGGGATTTGCTATTCCTGCAAATGATGCCGTAGCCATTATCAATCAACTTGAGAAAGCTGGAAAAGTTAGCCGACCTG
CTCTTGGAGTTCATATGGTTAACTTGACGACCTTGTCAACTAGTCAATTGGAAAAAGCTGGATTATCAAATACGGAATTA
ACATCCGGTGTCGTAATTGTCTCTACACAAAGTGGACTACCTGCAGATGGAAAATTAGAAACTTTTGATGTCATTACTGA
GATTGACGGAGAAACTATTCAAAATAAGAGTGATCTCCAAAGCGCTCTCTACAAACATCAAATTGGAGACACAATCACTG
TAACTTATTACCGCAATAATCAGAAACAAACTGTTGACATTAAGTTGACACATTCTACAGAAGAACTTAGCGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

60.453

99.749

0.603

  htrA Streptococcus gordonii str. Challis substr. CH1

60.506

99.246

0.6

  htrA Streptococcus pneumoniae Rx1

57.252

98.744

0.565

  htrA Streptococcus pneumoniae D39

57.252

98.744

0.565

  htrA Streptococcus pneumoniae R6

57.252

98.744

0.565

  htrA Streptococcus pneumoniae TIGR4

57.252

98.744

0.565

  htrA Streptococcus mitis NCTC 12261

57.252

98.744

0.565


Multiple sequence alignment