Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Spy49_0200 Genome accession   CP000829
Coordinates   208402..209796 (+) Length   464 a.a.
NCBI ID   ACI60542.1    Uniprot ID   -
Organism   Streptococcus pyogenes NZ131     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 203402..214796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Spy49_0194 - 203419..205125 (+) 1707 ACI60538.1 Putative ABC transporter, ATP-binding protein -
  Spy49_0195 - 205128..206912 (+) 1785 ACI60539.1 ABC transporter, ATP-binding/permease protein -
  Spy49_0198 - 207105..207797 (+) 693 ACI60540.1 hypothetical protein -
  Spy49_0199 dut 207907..208365 (+) 459 ACI60541.1 Putative deoxyuridine 5-triphosphate nucleotidohydrolase -
  Spy49_0200 radA 208402..209796 (+) 1395 ACI60542.1 RadA-like DNA repair protein Machinery gene
  Spy49_0201 - 209985..210482 (+) 498 ACI60543.1 Carbonic anhydrase-related protein -
  Spy49_0202 - 210613..211323 (+) 711 ACI60544.1 Conserved hypothetical protein -
  Spy49_0203 gluS 211506..212996 (+) 1491 ACI60545.1 Glutamyl-tRNA synthetase -
  Spy49_0204 fasB 213347..214693 (+) 1347 ACI60546.1 Putative histidine kinase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50616.01 Da        Isoelectric Point: 5.8253

>NTDB_id=20128 Spy49_0200 ACI60542.1 208402..209796(+) (radA) [Streptococcus pyogenes NZ131]
MGLSCLGKGDYYGKEKRTFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAGEKSRPVKLKDVDNISYHR
TQTDMSEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAE
TNMQAIRTEIENIKPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHM
VDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQS
LVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAF
LGEIGLTGEIRRVTRIEQRINEAAKLGFTKVYAPKNALQGIDIPQGIEVVGVTTVGQVLKAVFS

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=20128 Spy49_0200 ACI60542.1 208402..209796(+) (radA) [Streptococcus pyogenes NZ131]
GTGGGTTTGTCTTGTCTAGGGAAGGGAGATTACTATGGCAAAGAAAAAAGAACCTTTATCTGTCAGGAGTGTGGCTACCA
GTCGCCAAAGTATTTAGGGCGCTGTCCAAATTGCTCGGCCTGGTCTTCTTTTGTGGAAGAAGTAGAGGTCAAAGAAGTCA
AAAATGCCCGTGTTAGTCTAGCTGGAGAAAAGTCCAGACCGGTTAAACTAAAAGATGTGGATAATATTAGTTATCACAGA
ACACAGACTGACATGTCTGAATTTAATAGAGTTCTTGGAGGGGGTGTGGTTCCTGGAAGCTTGATTTTAATTGGTGGTGA
TCCAGGTATTGGAAAATCCACCTTACTCTTGCAGGTATCCACGCAGCTCGCTAATAAGGGAACGGTTCTCTATGTGTCTG
GGGAAGAATCAGCAGAGCAGATTAAACTGCGGAGTGAGCGTCTGGGTGATATTGACAATGAATTTTACCTCTATGCCGAA
ACCAATATGCAAGCTATTCGCACAGAAATTGAAAATATTAAACCAGATTTTTTAATTATTGACTCCATTCAGACCATCAT
GAGCCCTGATATTACAGGTGTTCAAGGATCAGTCAGTCAGGTGAGAGAAGTCACTGCAGAATTGATGCAGCTTGCAAAGA
CGAACAACATTGCAACCTTTATTGTGGGTCATGTCACCAAGGAAGGAACCTTGGCTGGGCCTCGTATGTTAGAACACATG
GTGGATACCGTTCTCTACTTTGAAGGGGAAAGGCATCACACCTTTCGCATTCTTCGGGCTGTGAAAAACCGCTTTGGCTC
CACTAACGAGATCGGCATCTTTGAAATGCAGTCTGGCGGCTTGGTAGAGGTCTTAAATCCTAGTCAAGTCTTTTTAGAGG
AACGCTTAGATGGGGCAACAGGATCGGCTGTCGTTGTAACGATGGAAGGAAGTCGTCCTATCTTAGCAGAGGTGCAATCT
TTAGTGACACCAACCGTTTTTGGCAATGCCAGACGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATAATGGC
AGTTTTAGAAAAGCGCTGTGGTTTACTCTTACAAAATCAAGATGCCTACCTCAAGTCGGCTGGTGGTGTCAAACTAGACG
AACCTGCCATTGATTTGGCAGTCGCTGTGGCTATCGCATCCAGTTATAAGGAAAAACCAACCAGCCCTCAAGAAGCTTTC
TTAGGCGAGATCGGGTTAACAGGTGAGATTCGGCGAGTGACCCGTATTGAGCAACGGATTAATGAAGCAGCAAAGCTTGG
ATTTACCAAGGTCTATGCTCCTAAAAATGCCTTGCAAGGCATTGATATCCCTCAAGGTATTGAGGTTGTCGGAGTGACTA
CGGTTGGTCAGGTTTTAAAGGCAGTTTTTAGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-436)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(19-46)

AAA domain (AAA_25)

(67-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

85.177

97.414

0.83
  radA Streptococcus pneumoniae Rx1

84.956

97.414

0.828
  radA Streptococcus pneumoniae D39

84.956

97.414

0.828
  radA Streptococcus pneumoniae R6

84.956

97.414

0.828
  radA Streptococcus pneumoniae TIGR4

84.956

97.414

0.828
  radA Streptococcus mitis SK321

84.956

97.414

0.828
  radA Bacillus subtilis subsp. subtilis str. 168

61.197

97.198

0.595

Multiple sequence alignment