Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   KAB08_RS17580 Genome accession   NZ_CP017656
Coordinates   3668447..3669187 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain KAB08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3663447..3674187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAB08_RS17555 (KAB08_03550) aroB 3663825..3664907 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  KAB08_RS17560 (KAB08_03551) aroK 3664936..3665505 (-) 570 WP_000643712.1 shikimate kinase AroK -
  KAB08_RS17565 (KAB08_03552) - 3665517..3665995 (-) 479 Protein_3471 type IV pilus secretin PilQ -
  KAB08_RS17570 (KAB08_03553) pilQ 3666147..3667841 (-) 1695 Protein_3472 type IV pilus secretin PilQ -
  KAB08_RS17575 (KAB08_03554) pilP 3667909..3668436 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  KAB08_RS17580 (KAB08_03555) pilO 3668447..3669187 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KAB08_RS17585 (KAB08_03556) pilN 3669184..3669825 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  KAB08_RS17590 (KAB08_03557) pilM 3669825..3670883 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  KAB08_RS17595 (KAB08_03558) ponA 3671046..3673601 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=201206 KAB08_RS17580 WP_000076101.1 3668447..3669187(-) (pilO) [Acinetobacter baumannii strain KAB08]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=201206 KAB08_RS17580 WP_000076101.1 3668447..3669187(-) (pilO) [Acinetobacter baumannii strain KAB08]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment