Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CGU46_RS10140 Genome accession   NZ_CP022525
Coordinates   2128350..2129024 (+) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain Ocean-1175     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2123350..2134024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGU46_RS10125 (CGU46_10125) - 2123896..2126502 (-) 2607 WP_023101723.1 phosphomannomutase/phosphoglucomutase -
  CGU46_RS10130 (CGU46_10130) dut 2126539..2126994 (-) 456 WP_003096567.1 dUTP diphosphatase -
  CGU46_RS10135 (CGU46_10135) coaBC 2127002..2128210 (-) 1209 WP_003098292.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CGU46_RS10140 (CGU46_10140) radC 2128350..2129024 (+) 675 WP_003096559.1 RadC family protein Machinery gene
  CGU46_RS10150 (CGU46_10150) - 2129287..2130867 (-) 1581 WP_003096557.1 ABC transporter substrate-binding protein -
  CGU46_RS10155 (CGU46_10155) rpmB 2131223..2131459 (+) 237 WP_003096556.1 50S ribosomal protein L28 -
  CGU46_RS10160 (CGU46_10160) rpmG 2131471..2131626 (+) 156 WP_003096555.1 50S ribosomal protein L33 -
  CGU46_RS10165 (CGU46_10165) - 2131763..2132125 (-) 363 WP_003096551.1 cupin domain-containing protein -
  CGU46_RS10170 (CGU46_10170) - 2132191..2133525 (-) 1335 WP_003096546.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=201201 CGU46_RS10140 WP_003096559.1 2128350..2129024(+) (radC) [Pseudomonas aeruginosa strain Ocean-1175]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=201201 CGU46_RS10140 WP_003096559.1 2128350..2129024(+) (radC) [Pseudomonas aeruginosa strain Ocean-1175]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGACGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACCGCGCGCCTCAAGGAAGCCCTGGCGCTCATCGATGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCTCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397

Multiple sequence alignment