Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CEK59_RS24835 Genome accession   NZ_CP022478
Coordinates   5243779..5244453 (-) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain LW     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5238779..5249453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEK59_RS24805 (CEK59_24700) - 5239224..5240558 (+) 1335 WP_003096546.1 aspartate aminotransferase family protein -
  CEK59_RS24810 (CEK59_24705) - 5240624..5240986 (+) 363 WP_003096551.1 cupin domain-containing protein -
  CEK59_RS24815 (CEK59_24710) rpmG 5241123..5241278 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  CEK59_RS24820 (CEK59_24715) rpmB 5241290..5241526 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  CEK59_RS24825 (CEK59_24720) - 5241882..5243462 (+) 1581 WP_058160290.1 ABC transporter substrate-binding protein -
  CEK59_RS32540 - 5243488..5243718 (+) 231 WP_023107407.1 hypothetical protein -
  CEK59_RS24835 (CEK59_24730) radC 5243779..5244453 (-) 675 WP_003096559.1 DNA repair protein RadC Machinery gene
  CEK59_RS24840 (CEK59_24735) coaBC 5244593..5245801 (+) 1209 WP_003098292.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CEK59_RS24845 (CEK59_24740) dut 5245809..5246264 (+) 456 WP_058160289.1 dUTP diphosphatase -
  CEK59_RS24850 (CEK59_24745) - 5246301..5248907 (+) 2607 WP_023101723.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=201142 CEK59_RS24835 WP_003096559.1 5243779..5244453(-) (radC) [Pseudomonas aeruginosa strain LW]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=201142 CEK59_RS24835 WP_003096559.1 5243779..5244453(-) (radC) [Pseudomonas aeruginosa strain LW]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTACGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAATGCGGCGGCGTTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACCGCGCGCCTCAAGGAAGCCCTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCTCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397

Multiple sequence alignment