Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | KAB06_RS08470 | Genome accession | NZ_CP017652 |
| Coordinates | 1769555..1769935 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain KAB06 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1764555..1774935
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KAB06_RS08440 (KAB06_01709) | kdsB | 1765458..1766219 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| KAB06_RS08445 (KAB06_01710) | - | 1766231..1767211 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| KAB06_RS08450 (KAB06_01711) | - | 1767223..1767564 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| KAB06_RS08455 (KAB06_01712) | - | 1767582..1768355 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| KAB06_RS08460 (KAB06_01713) | - | 1768393..1769001 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| KAB06_RS08465 (KAB06_01714) | - | 1769011..1769565 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| KAB06_RS08470 (KAB06_01715) | xcpV | 1769555..1769935 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| KAB06_RS08475 (KAB06_01716) | xcpW | 1769935..1770636 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| KAB06_RS08480 (KAB06_01717) | gspK | 1770636..1771595 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| KAB06_RS08485 (KAB06_01718) | - | 1771826..1772422 (+) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| KAB06_RS08490 (KAB06_01719) | ung | 1772473..1773186 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| KAB06_RS08495 (KAB06_01720) | - | 1773183..1774307 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| KAB06_RS08500 (KAB06_01721) | tadA | 1774314..1774817 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=201095 KAB06_RS08470 WP_000836911.1 1769555..1769935(+) (xcpV) [Acinetobacter baumannii strain KAB06]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=201095 KAB06_RS08470 WP_000836911.1 1769555..1769935(+) (xcpV) [Acinetobacter baumannii strain KAB06]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |