Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SDD27957_10905 Genome accession   CM001076
Coordinates   2075457..2076050 (-) Length   197 a.a.
NCBI ID   EFY03762.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2070457..2081050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_10875 - 2070850..2071119 (-) 270 EFY03756.1 hypothetical protein -
  SDD27957_10880 spxA 2071231..2071629 (-) 399 EFY03757.1 transcriptional regulator Spx -
  SDD27957_10885 recA 2071928..2072947 (-) 1020 EFY03758.1 recombinase A Machinery gene
  SDD27957_10890 cinA 2073123..2074394 (-) 1272 EFY03759.1 competence damage-inducible protein A Machinery gene
  SDD27957_10895 - 2074518..2074856 (-) 339 EFY03760.1 hypothetical protein -
  SDD27957_10900 - 2075067..2075318 (-) 252 EFY03761.1 DNA-3-methyladenine glycosylase -
  SDD27957_10905 ruvA 2075457..2076050 (-) 594 EFY03762.1 Holliday junction DNA helicase RuvA Machinery gene
  SDD27957_10910 - 2076052..2077272 (-) 1221 EFY03763.1 Putative integral membrane protein -
  SDD27957_10915 hexB 2077283..2079268 (-) 1986 EFY03764.1 DNA mismatch repair protein Machinery gene

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21742.94 Da        Isoelectric Point: 5.0568

>NTDB_id=20105 SDD27957_10905 EFY03762.1 2075457..2076050(-) (ruvA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKTAQQMVLDLAGKFVEVPQETSKAQPSTSSNNDELDEAIEALL
ALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=20105 SDD27957_10905 EFY03762.1 2075457..2076050(-) (ruvA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACCAATGGACTGGGCTATAT
TATCAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGACGCTCACTTGTTGTTTGGGTTCCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGCATT
GGTCCGACAACAGCTCTCGCTATTGTGGCAGTTGATGATAATCAGGGTCTTGTTAACGCCATTGATACCAGTGACATCAA
ATACCTGACTAAATTTCCTAAAATCGGAAAAAAAACGGCACAACAGATGGTTCTTGACTTAGCAGGAAAATTTGTGGAGG
TTCCACAAGAGACTAGTAAAGCACAACCATCTACCTCCTCAAACAATGACGAGTTGGATGAGGCTATTGAAGCCCTTCTT
GCCCTAGGTTATAAAGCAACAGAACTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATACAT
CAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

68.528

100

0.685
  ruvA Streptococcus pneumoniae R6

68.528

100

0.685
  ruvA Streptococcus pneumoniae D39

68.528

100

0.685
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.406

Multiple sequence alignment