Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   SSU05_1732 Genome accession   CP000407
Coordinates   1637544..1638233 (-) Length   229 a.a.
NCBI ID   ABP90698.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1632544..1643233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1727 - 1633015..1633539 (-) 525 ABP90693.1 Nitroreductase -
  SSU05_1728 - 1633724..1634623 (-) 900 ABP90694.1 DNA replication protein -
  SSU05_1729 - 1634623..1635774 (-) 1152 ABP90695.1 Replication initiation/membrane attachment protein -
  SSU05_1730 - 1635761..1636252 (-) 492 ABP90696.1 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains -
  SSU05_1731 - 1636324..1637454 (-) 1131 ABP90697.1 probable permease -
  SSU05_1732 covR 1637544..1638233 (-) 690 ABP90698.1 Response regulator Regulator
  SSU05_1733 - 1638315..1639061 (-) 747 ABP90699.1 6-phosphogluconate dehydrogenase -
  SSU05_1734 - 1639046..1639231 (-) 186 ABP90700.1 6-phosphogluconate dehydrogenase -
  SSU05_1735 - 1639228..1639740 (-) 513 ABP90701.1 6-phosphogluconate dehydrogenase -
  SSU05_1736 - 1639837..1640376 (-) 540 ABP90702.1 YlbN-like hypothetical protein -
  SSU05_1737 - 1640386..1641303 (-) 918 ABP90703.1 unknown protein -
  SSU05_1738 - 1641317..1641541 (-) 225 ABP90704.1 unknown protein -
  SSU05_1739 - 1641559..1642902 (-) 1344 ABP90705.1 Superfamily II DNA and RNA helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26255.14 Da        Isoelectric Point: 5.3968

>NTDB_id=20105 SSU05_1732 ABP90698.1 1637544..1638233(-) (covR) [Streptococcus suis 05ZYH33]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELATELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=20105 SSU05_1732 ABP90698.1 1637544..1638233(-) (covR) [Streptococcus suis 05ZYH33]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAAAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTACAGAACTGTTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTGGTGAAGCCCTTTGTCAT
TAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGACTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGCTGGCAACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432

Multiple sequence alignment