Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   KAB03_RS17385 Genome accession   NZ_CP017646
Coordinates   3645132..3645950 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain KAB03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3640132..3650950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAB03_RS17370 (KAB03_03504) pilE 3640349..3640774 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  KAB03_RS17375 (KAB03_03505) pilY2 3640771..3641253 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  KAB03_RS17380 (KAB03_03506) pilY1 3641266..3645120 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  KAB03_RS17385 (KAB03_03507) pilX 3645132..3645950 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KAB03_RS17390 (KAB03_03508) pilW 3645947..3646948 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  KAB03_RS17395 (KAB03_03509) pilV 3646949..3647509 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  KAB03_RS17400 (KAB03_03510) fimU 3647503..3647976 (-) 474 WP_001214061.1 pilus assembly FimT family protein Machinery gene
  KAB03_RS17405 (KAB03_03511) ispH 3648146..3649096 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KAB03_RS17410 (KAB03_03512) gmk 3649219..3649848 (+) 630 WP_000015937.1 guanylate kinase -
  KAB03_RS17415 (KAB03_03513) rpoZ 3649921..3650199 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KAB03_RS20235 - 3650238..3650367 (+) 130 Protein_3423 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=201017 KAB03_RS17385 WP_000149374.1 3645132..3645950(-) (pilX) [Acinetobacter baumannii strain KAB03]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=201017 KAB03_RS17385 WP_000149374.1 3645132..3645950(-) (pilX) [Acinetobacter baumannii strain KAB03]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment