Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | KAB03_RS09030 | Genome accession | NZ_CP017646 |
| Coordinates | 1874331..1874711 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain KAB03 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1869331..1879711
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KAB03_RS09000 (KAB03_01812) | tadA | 1869449..1869952 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| KAB03_RS09005 (KAB03_01813) | - | 1869959..1871083 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| KAB03_RS09010 (KAB03_01814) | ung | 1871080..1871793 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| KAB03_RS09015 (KAB03_01815) | - | 1871844..1872440 (-) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| KAB03_RS09020 (KAB03_01816) | gspK | 1872671..1873630 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| KAB03_RS09025 (KAB03_01817) | xcpW | 1873630..1874331 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| KAB03_RS09030 (KAB03_01818) | xcpV | 1874331..1874711 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| KAB03_RS09035 (KAB03_01819) | - | 1874701..1875255 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| KAB03_RS09040 (KAB03_01820) | - | 1875265..1875873 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| KAB03_RS09045 (KAB03_01821) | - | 1875911..1876684 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| KAB03_RS09050 (KAB03_01822) | - | 1876702..1877043 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| KAB03_RS09055 (KAB03_01823) | - | 1877055..1878035 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| KAB03_RS09060 (KAB03_01824) | kdsB | 1878047..1878808 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=201004 KAB03_RS09030 WP_000836911.1 1874331..1874711(-) (xcpV) [Acinetobacter baumannii strain KAB03]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=201004 KAB03_RS09030 WP_000836911.1 1874331..1874711(-) (xcpV) [Acinetobacter baumannii strain KAB03]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |