Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CG450_RS04050 Genome accession   NZ_CP022477
Coordinates   829628..830263 (+) Length   211 a.a.
NCBI ID   WP_003185124.1    Uniprot ID   Q65F45
Organism   Bacillus licheniformis strain BL-010     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 824628..835263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG450_RS04025 - 825742..826128 (+) 387 WP_003185133.1 protein liaI -
  CG450_RS04030 liaH 826149..826832 (+) 684 WP_009329563.1 stress responsive protein LiaH -
  CG450_RS04035 - 826938..827801 (+) 864 WP_025807519.1 DUF4097 domain-containing protein -
  CG450_RS04040 liaF 827832..828563 (+) 732 WP_003185130.1 cell wall-active antibiotics response protein LiaF -
  CG450_RS04045 liaS 828560..829624 (+) 1065 WP_071583692.1 two-component system sensor histidine kinase LiaS -
  CG450_RS04050 vraR 829628..830263 (+) 636 WP_003185124.1 response regulator Regulator
  CG450_RS04055 - 830300..830683 (-) 384 WP_003185122.1 hypothetical protein -
  CG450_RS04060 - 830727..831848 (-) 1122 WP_003185120.1 Ger(x)C family spore germination protein -
  CG450_RS04065 - 831845..832945 (-) 1101 WP_048349997.1 endospore germination permease -
  CG450_RS04070 - 832914..834356 (-) 1443 WP_048349996.1 spore germination protein -
  CG450_RS04075 - 834480..834647 (+) 168 WP_003185114.1 YvzF family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23095.83 Da        Isoelectric Point: 5.1797

>NTDB_id=200949 CG450_RS04050 WP_003185124.1 829628..830263(+) (vraR) [Bacillus licheniformis strain BL-010]
MIRVLLIDDHEMVRMGLAAFLESQPDIEVIGEASDGKRGVELALETKPDVILMDLVMEGMDGIEATKQICRQLADPKIIV
LTSFVDDDKVYPVIEAGALSYLLKTSKASEIADAIRAASVGEPKLEAKVAGKVLSKLRHSAGEQPLHQSLTARELEILKL
VAEGKTNKGIAEELYITIKTVKTHVTNILSKLEVDDRTQAAIYAHRNKLVD

Nucleotide


Download         Length: 636 bp        

>NTDB_id=200949 CG450_RS04050 WP_003185124.1 829628..830263(+) (vraR) [Bacillus licheniformis strain BL-010]
GTGATTCGAGTATTGTTAATTGATGATCATGAAATGGTGAGAATGGGGCTGGCCGCTTTCCTGGAATCCCAGCCTGATAT
TGAAGTGATTGGGGAGGCATCAGACGGAAAGCGCGGCGTTGAATTGGCGCTTGAAACCAAACCCGACGTGATTTTGATGG
ATCTTGTGATGGAAGGGATGGACGGAATTGAGGCCACGAAACAAATATGCCGGCAGCTTGCCGATCCGAAAATCATCGTT
CTGACGAGCTTCGTTGATGATGACAAGGTCTATCCGGTCATCGAAGCCGGAGCGCTCAGCTATTTGCTGAAAACGTCGAA
AGCGAGTGAAATCGCCGATGCGATCAGGGCTGCGAGCGTCGGAGAACCAAAGCTTGAAGCCAAAGTCGCAGGAAAAGTGT
TGTCCAAGCTGAGACATTCAGCCGGCGAACAGCCCCTTCATCAATCGCTGACGGCAAGAGAATTGGAAATCCTCAAACTT
GTAGCAGAGGGCAAGACAAACAAAGGTATTGCCGAAGAATTATATATCACCATTAAAACAGTTAAAACGCATGTGACGAA
CATCCTTTCCAAGCTTGAAGTCGACGACCGGACACAAGCCGCAATCTACGCCCACCGAAACAAACTTGTCGACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(148-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65F45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

53.11

99.052

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

36.444

100

0.389