Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   KAB01_RS17240 Genome accession   NZ_CP017642
Coordinates   3623234..3624052 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain KAB01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3618234..3629052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAB01_RS17225 (KAB01_03494) pilE 3618451..3618876 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  KAB01_RS17230 (KAB01_03495) pilY2 3618873..3619355 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  KAB01_RS17235 (KAB01_03496) pilY1 3619368..3623222 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  KAB01_RS17240 (KAB01_03497) pilX 3623234..3624052 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KAB01_RS17245 (KAB01_03498) pilW 3624049..3625050 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  KAB01_RS17250 (KAB01_03499) pilV 3625051..3625611 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  KAB01_RS17255 (KAB01_03500) fimU 3625605..3626078 (-) 474 WP_001214061.1 pilus assembly FimT family protein Machinery gene
  KAB01_RS17260 (KAB01_03501) ispH 3626248..3627198 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KAB01_RS17265 (KAB01_03502) gmk 3627321..3627950 (+) 630 WP_000015937.1 guanylate kinase -
  KAB01_RS17270 (KAB01_03503) rpoZ 3628023..3628301 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KAB01_RS20060 - 3628340..3628469 (+) 130 Protein_3395 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=200924 KAB01_RS17240 WP_000149374.1 3623234..3624052(-) (pilX) [Acinetobacter baumannii strain KAB01]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=200924 KAB01_RS17240 WP_000149374.1 3623234..3624052(-) (pilX) [Acinetobacter baumannii strain KAB01]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment