Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BGM07_RS24500 Genome accession   NZ_CP022473
Coordinates   3156020..3156694 (-) Length   224 a.a.
NCBI ID   WP_021448949.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-Q     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3151020..3161694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM07_RS24465 (BGM07_024510) coaD 3151473..3151958 (+) 486 WP_017449082.1 pantetheine-phosphate adenylyltransferase -
  BGM07_RS24470 (BGM07_024515) - 3151955..3152899 (+) 945 WP_021448976.1 glycosyl transferase family 90 -
  BGM07_RS24475 (BGM07_024520) - 3152924..3153622 (-) 699 WP_021449028.1 glycosyltransferase family 25 protein -
  BGM07_RS24480 (BGM07_024525) mutM 3153732..3154541 (-) 810 WP_021448950.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BGM07_RS24485 (BGM07_024530) - 3154644..3155120 (-) 477 WP_021449025.1 hypothetical protein -
  BGM07_RS24490 (BGM07_024535) rpmG 3155296..3155466 (-) 171 WP_004410866.1 50S ribosomal protein L33 -
  BGM07_RS24495 (BGM07_024540) rpmB 3155480..3155716 (-) 237 WP_005467944.1 50S ribosomal protein L28 -
  BGM07_RS24500 (BGM07_024545) radC 3156020..3156694 (-) 675 WP_021448949.1 DNA repair protein RadC Machinery gene
  BGM07_RS24505 (BGM07_024550) - 3156808..3158481 (-) 1674 WP_015296117.1 methyl-accepting chemotaxis protein -
  BGM07_RS24515 (BGM07_024560) coaBC 3158666..3159865 (+) 1200 WP_020839956.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BGM07_RS24520 (BGM07_024565) slmA 3160026..3160616 (+) 591 WP_005478760.1 nucleoid occlusion factor SlmA -
  BGM07_RS24525 (BGM07_024570) - 3160622..3161572 (+) 951 WP_017449076.1 Kdo(2)-lipid IV(A) acyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25407.16 Da        Isoelectric Point: 6.6112

>NTDB_id=200913 BGM07_RS24500 WP_021448949.1 3156020..3156694(-) (radC) [Vibrio parahaemolyticus strain MAVP-Q]
MILKALPNESMPREKLLQRGPQALTDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEQEFCQHKGLGQAKYV
QLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLDNQHRVIKDEILFEGTLDAASVYPREVVKR
ALHHNAAALILAHNHPSGVAEPSQADRRITRRLIDALALVDIRIWDHFVIGDGESVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=200913 BGM07_RS24500 WP_021448949.1 3156020..3156694(-) (radC) [Vibrio parahaemolyticus strain MAVP-Q]
ATGATACTCAAAGCTTTGCCAAATGAGTCGATGCCACGAGAGAAACTTCTGCAACGTGGGCCGCAGGCGTTAACCGATGC
CGAATTACTGGCGATATTCCTCCGTACGGGCACGCAAGGCATGAACGTGATTGAGTTGGCCGATTTCCTTATTCAAGATT
TTGGTTCGCTTAGGCAGTTGTTCTCCGCTTCAGAACAGGAGTTTTGTCAGCATAAAGGGCTAGGGCAGGCCAAATATGTG
CAATTGCAAGCGGTGTTAGAAATGACTCAGCGATATTTGGCGGAAACCCTCAAGCGTGGCGACGCCTTAACCAGCCCTGA
GCAAACTAAATTATATCTCTCCTCTATATTAAGAGACCGCCAAAGAGAGGCTTTTTACATTCTTTTCCTCGATAACCAAC
ACCGAGTAATAAAAGATGAGATTTTATTCGAAGGAACCTTGGATGCCGCATCAGTTTACCCTAGAGAAGTAGTAAAAAGA
GCCCTGCACCACAATGCGGCTGCTTTGATTTTGGCGCATAACCACCCGTCCGGTGTCGCCGAGCCAAGCCAGGCAGACCG
CAGGATTACAAGGCGATTAATTGATGCGTTGGCGCTGGTGGATATTCGCATTTGGGACCATTTCGTTATTGGCGATGGGG
AAAGTGTCTCTTTTGCTGAAAGAGGATGGATATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.152

96.875

0.496
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.288

99.107

0.379

Multiple sequence alignment