Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxO   Type   Regulator
Locus tag   BJD94_RS05325 Genome accession   NZ_CP017635
Coordinates   922081..923574 (+) Length   497 a.a.
NCBI ID   WP_038964727.1    Uniprot ID   -
Organism   Vibrio vulnificus Env1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context


Location: 917081..928574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD94_RS05310 (BJD94_04215) - 918105..918797 (+) 693 WP_039542557.1 tyrosine-protein kinase family protein -
  BJD94_RS05315 (BJD94_04220) - 918794..919612 (+) 819 WP_080526377.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  BJD94_RS05320 (BJD94_04225) - 919636..921924 (+) 2289 WP_103154977.1 ATP-binding protein -
  BJD94_RS05325 (BJD94_04230) luxO 922081..923574 (+) 1494 WP_038964727.1 sigma-54 dependent transcriptional regulator Regulator
  BJD94_RS05330 (BJD94_04235) - 923567..924700 (+) 1134 WP_017422094.1 glycosyltransferase -
  BJD94_RS05335 (BJD94_04240) - 924808..926001 (+) 1194 WP_103154978.1 glycosyltransferase -
  BJD94_RS05340 (BJD94_04245) - 925998..927176 (+) 1179 WP_103154979.1 glycosyltransferase family 4 protein -

Sequence


Protein


Download         Length: 497 a.a.        Molecular weight: 55740.88 Da        Isoelectric Point: 6.6070

>NTDB_id=200802 BJD94_RS05325 WP_038964727.1 922081..923574(+) (luxO) [Vibrio vulnificus Env1]
MRAKVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERNTPQLVILDLKLPDMSGEDVLDWINQNDVPTAVIIA
TAHGSVDIAVSLMNKGAEDFLEKPIKADRLKTSIAVHLKRAKLEHLVENIQSRFDRPRYHGFIGACLPMQAVYKTIDSVA
PTTASVFINGESGTGKEVCAEAIHKQSLRKDQPFIAINCGAIPRDLMESEIFGHLKGAFTGATIDRKGAAMLANGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGSKEIKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIEMPPLRERGNDI
VELANHFLKTYAKEDGKKFNSISKEAQSILKKYNWPGNVRQLQNIIRNIVVLNDDNQLNMEHLPAQLTTKPQTVKEPAKL
SAPPQPVQAVIQEMRNGHEALNHHSLETQTSKANPLAHNAFHHSDGSIRPMWQIEREAIQNAIAFCDGNVISAAVMLELS
PSTVYRKKQAWEAEENA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=200802 BJD94_RS05325 WP_038964727.1 922081..923574(+) (luxO) [Vibrio vulnificus Env1]
ATGCGAGCAAAAGTACTGTTAGTCGAGGATTCCACTTCACTTGCCATTTTATATAAGCAATACGTCAAAGATGAACCCTA
TGACATTTTTCACGTGGAAACCGGACGTGACGCGATTCAGTTTATTGAGCGCAATACACCGCAGCTGGTGATTTTAGATC
TCAAGTTGCCCGACATGTCCGGGGAAGATGTGCTTGACTGGATCAACCAAAACGATGTTCCGACCGCGGTTATCATTGCC
ACCGCTCATGGTTCCGTCGACATCGCCGTCAGCTTAATGAACAAAGGGGCGGAAGATTTTCTCGAAAAGCCAATCAAAGC
CGACCGTTTAAAAACATCCATTGCCGTTCATCTAAAACGCGCCAAATTAGAGCATTTAGTTGAGAACATACAGTCTCGCT
TTGACAGACCACGTTATCACGGCTTTATCGGCGCGTGCCTGCCAATGCAGGCAGTATATAAAACCATTGATTCAGTGGCG
CCAACCACCGCCAGTGTTTTTATCAACGGAGAAAGTGGCACAGGGAAAGAAGTGTGTGCTGAAGCGATACACAAACAGAG
TCTGCGCAAAGACCAGCCCTTTATCGCAATCAACTGTGGGGCGATTCCTCGTGACTTAATGGAAAGCGAAATCTTTGGTC
ACTTAAAAGGGGCGTTTACCGGAGCGACAATCGATCGCAAAGGTGCAGCAATGCTGGCCAACGGCGGCACGCTATTTCTC
GATGAATTGTGCGAGATGGAACTGGAGATGCAGAAAAAACTGCTGCGTTTTCTTCAGACCGGCACCTTCACCCCACTCGG
CGGCAGTAAAGAAATCAAAGTGGATGTACGCATCATCTGCGCCACCAATCGCGATCCCCTCAAAGAGGTCGAAGAAGGCC
GTTTTAGGGAAGATCTCTACTATCGTGTCCATGTGGTTCCAATTGAAATGCCACCACTGAGAGAACGCGGTAACGACATC
GTTGAGCTGGCCAATCACTTCCTCAAAACTTACGCCAAAGAGGACGGCAAAAAATTCAACTCAATCAGCAAAGAAGCGCA
ATCAATACTTAAAAAATACAACTGGCCGGGCAATGTCCGTCAGTTACAAAACATCATTCGTAACATTGTCGTTCTCAACG
ATGACAACCAACTGAATATGGAACATTTGCCGGCTCAACTCACCACCAAACCGCAAACTGTCAAAGAACCCGCTAAACTC
TCAGCACCACCTCAACCCGTTCAAGCGGTCATCCAAGAGATGCGCAACGGACATGAGGCGTTAAACCATCATTCGCTTGA
GACGCAAACATCCAAGGCCAATCCACTCGCTCACAATGCGTTCCACCATTCTGACGGCAGTATCCGTCCAATGTGGCAAA
TTGAACGCGAAGCGATTCAAAACGCCATCGCCTTTTGCGACGGCAACGTGATCAGTGCGGCGGTGATGTTGGAGCTAAGC
CCTTCGACGGTGTATCGCAAAAAACAAGCGTGGGAGGCAGAAGAAAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

51.029

97.787

0.499

  pilR Acinetobacter baumannii strain A118

36.81

98.39

0.362


Multiple sequence alignment