Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CGC46_RS27180 Genome accession   NZ_CP022407
Coordinates   5110945..5111682 (-) Length   245 a.a.
NCBI ID   WP_000197674.1    Uniprot ID   -
Organism   Escherichia coli O121:H19 strain 16-9255     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5105945..5116682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGC46_RS27145 (CGC46_27195) yfiL 5106104..5106469 (-) 366 WP_001370532.1 DUF2799 domain-containing protein -
  CGC46_RS27150 (CGC46_27200) aroF 5106678..5107748 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CGC46_RS27155 (CGC46_27205) tyrA 5107759..5108880 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CGC46_RS27160 (CGC46_27210) pheA 5108923..5110083 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  CGC46_RS27165 pheL 5110182..5110229 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CGC46_RS27170 (CGC46_27215) raiA 5110333..5110674 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CGC46_RS27180 (CGC46_27225) comL 5110945..5111682 (-) 738 WP_000197674.1 outer membrane protein assembly factor BamD Machinery gene
  CGC46_RS27185 (CGC46_27230) rluD 5111817..5112797 (+) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CGC46_RS27190 (CGC46_27235) yfiH 5112794..5113525 (+) 732 WP_000040122.1 purine nucleoside phosphorylase YfiH -
  CGC46_RS27195 (CGC46_27240) clpC 5113655..5116228 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27825.41 Da        Isoelectric Point: 6.4874

>NTDB_id=200609 CGC46_RS27180 WP_000197674.1 5110945..5111682(-) (comL) [Escherichia coli O121:H19 strain 16-9255]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
PDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=200609 CGC46_RS27180 WP_000197674.1 5110945..5111682(-) (comL) [Escherichia coli O121:H19 strain 16-9255]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTAAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
CCCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376