Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CEJ55_RS23035 Genome accession   NZ_CP022393
Coordinates   4510305..4511042 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain E62     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4505305..4516042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEJ55_RS23020 (CEJ55_23030) clpC 4505759..4508332 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CEJ55_RS23025 (CEJ55_23035) yfiH 4508462..4509193 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  CEJ55_RS23030 (CEJ55_23040) rluD 4509190..4510170 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CEJ55_RS23035 (CEJ55_23045) comL 4510305..4511042 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CEJ55_RS23045 (CEJ55_23055) raiA 4511313..4511654 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CEJ55_RS25415 pheL 4511758..4511805 (+) 48 WP_157719155.1 pheA operon leader peptide PheL -
  CEJ55_RS23050 (CEJ55_23060) pheA 4511904..4513064 (+) 1161 WP_000200100.1 bifunctional chorismate mutase/prephenate dehydratase -
  CEJ55_RS23055 (CEJ55_23065) tyrA 4513107..4514228 (-) 1122 WP_089180311.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CEJ55_RS23060 (CEJ55_23070) aroF 4514239..4515309 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CEJ55_RS23065 (CEJ55_23075) yfiL 4515519..4515884 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=200527 CEJ55_RS23035 WP_000197686.1 4510305..4511042(+) (comL) [Escherichia coli strain E62]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=200527 CEJ55_RS23035 WP_000197686.1 4510305..4511042(+) (comL) [Escherichia coli strain E62]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376