Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | A4W85_RS06690 | Genome accession | NZ_CP017570 |
| Coordinates | 1310370..1311377 (-) | Length | 335 a.a. |
| NCBI ID | WP_251944679.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain TMW 1.578 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1305370..1316377
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4W85_RS06650 (A4W85_06605) | - | 1305705..1306163 (-) | 459 | WP_096584650.1 | laaL | - |
| A4W85_RS06655 (A4W85_06610) | - | 1306218..1307414 (-) | 1197 | WP_011374993.1 | acetate/propionate family kinase | - |
| A4W85_RS06660 (A4W85_06615) | - | 1307436..1308446 (-) | 1011 | WP_025016388.1 | class I SAM-dependent methyltransferase | - |
| A4W85_RS06665 (A4W85_06620) | - | 1308570..1308908 (-) | 339 | WP_011374995.1 | hypothetical protein | - |
| A4W85_RS06670 (A4W85_06625) | comGF | 1308871..1309383 (-) | 513 | WP_041820873.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| A4W85_RS06675 (A4W85_06630) | comGE | 1309358..1309663 (-) | 306 | WP_011374997.1 | hypothetical protein | Machinery gene |
| A4W85_RS06680 (A4W85_06635) | comGD | 1309650..1310102 (-) | 453 | WP_035145016.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| A4W85_RS06685 (A4W85_06640) | comGC | 1310074..1310373 (-) | 300 | WP_076632062.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| A4W85_RS06690 (A4W85_06645) | comGB | 1310370..1311377 (-) | 1008 | WP_251944679.1 | type II secretion system F family protein | Machinery gene |
| A4W85_RS06695 (A4W85_06650) | comGA | 1311370..1312260 (-) | 891 | WP_251944680.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| A4W85_RS06700 (A4W85_06655) | - | 1312375..1313106 (-) | 732 | WP_011375002.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| A4W85_RS06705 (A4W85_06660) | - | 1313197..1313697 (-) | 501 | WP_011375003.1 | VanZ family protein | - |
| A4W85_RS06710 (A4W85_06665) | - | 1313794..1314168 (+) | 375 | WP_011375004.1 | hypothetical protein | - |
| A4W85_RS06720 (A4W85_06675) | - | 1314548..1315747 (-) | 1200 | WP_251944682.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 38484.44 Da Isoelectric Point: 9.5442
>NTDB_id=200463 A4W85_RS06690 WP_251944679.1 1310370..1311377(-) (comGB) [Latilactobacillus sakei strain TMW 1.578]
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHADFPTDYVGQIELTE
LQGNLGQCLWHLGRIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLSRIILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGFIIICTY
LSILLPLYQTMEGIS
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHADFPTDYVGQIELTE
LQGNLGQCLWHLGRIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLSRIILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGFIIICTY
LSILLPLYQTMEGIS
Nucleotide
Download Length: 1008 bp
>NTDB_id=200463 A4W85_RS06690 WP_251944679.1 1310370..1311377(-) (comGB) [Latilactobacillus sakei strain TMW 1.578]
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTCTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGCTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGCCGGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATTCG
GGGTGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGCGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAGTCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTTAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTGGCTAAGCATAATCTTACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGTAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGTTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTCTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGCTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGCCGGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATTCG
GGGTGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGCGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAGTCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTTAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTGGCTAAGCATAATCTTACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGTAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGTTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Latilactobacillus sakei subsp. sakei 23K |
99.701 |
100 |
0.997 |