Detailed information NTG0200417

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: A4W84_RS05450
• Genome accession: NZ_CP017568
• Coordinates: 1074442..1076709 (-)
• Length: 755 a.a.
• NCBI ID: WP_251908015.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain TMW 1.417
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1069442..1081709

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4W84_RS05425 (A4W84_05340)	-	1069564..1070511 (-)	948	WP_011374764.1	hypothetical protein	-
A4W84_RS05430 (A4W84_05345)	-	1070600..1072318 (-)	1719	WP_251908013.1	ribonuclease J	-
A4W84_RS05435 (A4W84_05350)	rpsO	1072546..1072815 (-)	270	WP_011374766.1	30S ribosomal protein S15	-
A4W84_RS05440 (A4W84_05355)	rpsT	1073094..1073348 (+)	255	WP_011374767.1	30S ribosomal protein S20	-
A4W84_RS05445 (A4W84_05360)	holA	1073417..1074445 (-)	1029	WP_011374768.1	DNA polymerase III subunit delta	-
A4W84_RS05450 (A4W84_05365)	comEC	1074442..1076709 (-)	2268	WP_251908015.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
A4W84_RS05455 (A4W84_05370)	-	1076706..1077194 (-)	489	WP_011374770.1	ComE operon protein 2	-
A4W84_RS05460 (A4W84_05375)	comEA	1077252..1077959 (-)	708	WP_231952379.1	helix-hairpin-helix domain-containing protein	Machinery gene
A4W84_RS05465 (A4W84_05380)	-	1078031..1079077 (-)	1047	WP_251908017.1	SepM family pheromone-processing serine protease	-
A4W84_RS05470 (A4W84_05385)	coaD	1079079..1079576 (-)	498	WP_251908018.1	pantetheine-phosphate adenylyltransferase	-
A4W84_RS05475 (A4W84_05390)	rsmD	1079589..1080143 (-)	555	WP_011374774.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
A4W84_RS05480 (A4W84_05395)	-	1080148..1080438 (-)	291	WP_011374775.1	YlbG family protein	-
A4W84_RS05485 (A4W84_05400)	-	1080462..1081550 (-)	1089	WP_250824293.1	CAP-associated domain-containing protein	-

Sequence

Protein

• Length: 755 a.a.
• Molecular weight: 85314.11 Da
• Isoelectric Point: 10.0762

>NTDB_id=200417 A4W84_RS05450 WP_251908015.1 1074442..1076709(-) (comEC) [Latilactobacillus sakei strain TMW 1.417]
MKNNWIYPVICLISLNSLMLGGQSWLTWSLLLLAFVKLISLRQTQITIMTIGLCLVYGGRFWISYHSVTQPQQPVAQYFK
VQPDAIQVAGDSVQLTAIGQQDGQTIKAYYRCQTFAEKRRWQQVRHPVLFYGEKDFKRIQGATNQNEFDYARFLAQQKRC
FYQLTLAKKTTFALRRPSSGLDWLHYWRQTCALYLRKLPTALRFHAQTLLLGLREAQVDHYQVVLGHLGIIHLLSLSGLH
VFYLVQVIRWCATYCRIPREWLNCMLFGLLPVYALLVGGTTSISRAIALILSRLLCKQLGIRQSRLDSWSLVLLVNLFWQ
PYLLHSMGGILSYLMAFALIYIGEGSTFKVAYWLSLLSLPVCLRFNYRWHVLTIMMNALVTPIYLPIVLGLVIVASVMLP
VSNLVVNGCELLLQLIYKGLGLVAQIPHAMITFGKIPLLPLLLIVTVSLLLIDGQAISNQWRKRLKRTLVSLYLASFLAI
HFNPTGRVVMFDIGQGDSLLIQTPFNRHQLLIDTGGRLALPQAAWQRRAQVSRAEKVTVNYLYSQGVDHIDAVALSHQDA
DHIGDLNQILKQIRVDRIICAAGLPQNRQFQRQIRPFLATVQIEPYLAGAAFKVGSQKFNVLAPTKPGKGENSDSLVLQA
QIGGASWLFTGDLEQEGERAIIERYPQLTVDYLKVGHHGSKTASDPTVIKKLHLKGALISTGRENRYGHPHQETLTTLQA
AKVPYWLTAQQGMLTWAYGPGQSEKLQTTIKDSEK

Nucleotide

• Length: 2268 bp

>NTDB_id=200417 A4W84_RS05450 WP_251908015.1 1074442..1076709(-) (comEC) [Latilactobacillus sakei strain TMW 1.417]
ATGAAAAACAACTGGATTTATCCAGTTATTTGTTTAATCAGTTTAAATAGCTTAATGCTTGGGGGGCAATCTTGGTTAAC
CTGGAGCTTATTATTATTGGCTTTTGTCAAATTAATAAGTCTCAGACAAACTCAGATAACGATTATGACGATCGGCTTAT
GCCTTGTTTACGGGGGCCGCTTTTGGATAAGCTATCATAGTGTGACGCAACCGCAACAACCGGTAGCACAGTACTTTAAA
GTGCAACCCGATGCGATTCAAGTAGCGGGCGATAGTGTCCAATTAACGGCAATCGGCCAACAAGATGGTCAGACTATTAA
GGCTTATTATCGCTGCCAAACGTTCGCCGAGAAGCGGCGATGGCAGCAAGTACGACACCCCGTTTTGTTCTATGGGGAAA
AAGATTTTAAACGTATACAGGGTGCTACCAATCAAAATGAGTTTGATTATGCCCGTTTTTTAGCGCAACAGAAGCGCTGC
TTTTACCAACTGACGTTAGCCAAAAAAACAACTTTTGCGCTGAGACGCCCTAGTAGCGGTTTGGATTGGCTACATTATTG
GCGCCAAACGTGTGCACTGTATTTACGTAAGTTACCAACAGCACTACGGTTTCATGCGCAGACGTTACTATTAGGTTTGC
GGGAAGCGCAAGTTGACCATTACCAGGTTGTTTTGGGCCACTTAGGGATTATTCATCTCTTAAGTCTATCAGGGTTGCAC
GTGTTTTATTTAGTGCAAGTCATTCGGTGGTGTGCGACTTATTGCCGCATACCGCGTGAGTGGTTAAACTGTATGTTATT
TGGGCTATTGCCGGTATATGCCTTACTGGTTGGTGGTACGACAAGCATTAGTCGCGCGATTGCGCTTATTTTATCCCGGT
TACTTTGCAAACAGTTGGGCATTCGGCAATCAAGGTTAGATAGTTGGAGTTTAGTATTACTGGTCAATTTATTCTGGCAG
CCTTATTTGCTACATAGTATGGGCGGGATTTTAAGTTATTTGATGGCCTTTGCGCTCATTTATATTGGTGAGGGTAGCAC
TTTTAAAGTTGCTTACTGGCTAAGTTTATTGAGTTTGCCGGTTTGCTTACGCTTTAATTATCGCTGGCATGTGCTGACGA
TAATGATGAATGCCTTGGTAACGCCTATCTATCTGCCAATTGTGCTAGGTTTGGTGATTGTAGCGAGTGTGATGTTACCT
GTTAGCAATCTAGTGGTTAACGGATGTGAGTTGCTGTTACAGTTGATTTACAAAGGCTTAGGACTAGTTGCTCAAATTCC
CCATGCGATGATTACGTTTGGTAAAATACCATTATTACCGTTACTATTGATTGTGACGGTCAGTCTCTTGTTAATCGATG
GCCAGGCAATTAGTAATCAATGGCGTAAACGGCTGAAACGCACATTGGTAAGTTTGTATCTGGCTAGTTTTTTGGCGATT
CATTTTAATCCGACTGGTCGGGTGGTCATGTTTGATATTGGTCAAGGTGATAGTCTGTTGATTCAGACGCCGTTTAACCG
GCATCAGCTTTTAATCGATACTGGTGGTCGCCTAGCGCTACCGCAAGCAGCTTGGCAACGGCGGGCGCAGGTTTCACGAG
CGGAAAAAGTAACGGTTAATTATCTCTATAGCCAAGGAGTAGATCACATTGATGCGGTGGCACTTTCTCATCAGGATGCC
GATCATATTGGTGATTTGAACCAGATTTTAAAACAAATTCGTGTTGATCGAATCATTTGTGCTGCCGGATTACCGCAAAA
TCGGCAATTTCAAAGACAAATTCGACCATTTTTAGCAACGGTTCAGATAGAACCCTATTTAGCCGGGGCCGCTTTTAAAG
TGGGATCGCAAAAATTTAACGTCTTAGCACCGACTAAGCCGGGAAAAGGCGAAAATAGTGATTCGTTAGTCTTACAGGCA
CAAATTGGTGGGGCTAGCTGGCTTTTTACAGGAGATCTAGAACAAGAAGGTGAACGGGCAATTATCGAGCGGTATCCACA
ATTAACCGTCGATTATTTAAAAGTTGGCCATCATGGTAGTAAAACGGCTAGTGACCCCACCGTGATTAAAAAATTGCACT
TAAAAGGCGCATTAATCTCAACCGGCAGAGAGAATCGTTATGGTCATCCGCACCAGGAAACTTTGACGACTTTGCAAGCG
GCCAAAGTGCCTTATTGGCTAACGGCGCAGCAGGGGATGTTGACCTGGGCGTACGGTCCCGGTCAAAGCGAAAAACTGCA
AACAACAATAAAGGATAGTGAAAAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (494-702)

• Competence protein (Competence) (209-452)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Latilactobacillus sakei subsp. sakei 23K	99.47	100	0.995