Detailed information NTG0020037

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: SDD27957_04235
• Genome accession: CM001076
• Coordinates: 832132..833361 (+)
• Length: 409 a.a.
• NCBI ID: EFY02502.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 827132..838361

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SDD27957_04210	-	827755..829032 (-)	1278	EFY02497.1	HMG-CoA reductase	-
SDD27957_04215	-	829013..830194 (-)	1182	EFY02498.1	hydroxymethylglutaryl-CoA synthase	-
SDD27957_04220	thyA	830409..831248 (+)	840	EFY02499.1	thymidylate synthase	-
SDD27957_04225	-	831329..831826 (+)	498	EFY02500.1	dihydrofolate reductase	-
SDD27957_04230	-	831846..832016 (+)	171	EFY02501.1	hypothetical protein	-
SDD27957_04235	clpX	832132..833361 (+)	1230	EFY02502.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
SDD27957_04240	engB	833371..833592 (+)	222	EFY02503.1	ribosome biogenesis GTP-binding protein YsxC	-
SDD27957_04245	engB	833609..833971 (+)	363	EFY02504.1	ribosome biogenesis GTP-binding protein YsxC	-
SDD27957_04250	-	834115..834858 (+)	744	EFY02505.1	hypothetical protein	-
SDD27957_04255	-	834915..837023 (-)	2109	EFY02506.1	ATP-dependent protease ATP-binding subunit ClpL	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45072.60 Da
• Isoelectric Point: 4.5866

>NTDB_id=20037 SDD27957_04235 EFY02502.1 832132..833361(+) (clpX) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MAGNRTNDIKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEVLNQYVVGQDR
AKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQI
LTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVIKVRITKAAVEG
KSKPVLETA

Nucleotide

• Length: 1230 bp

>NTDB_id=20037 SDD27957_04235 EFY02502.1 832132..833361(+) (clpX) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGGCAGGAAATCGTACAAACGATATTAAAGTATATTGCTCATTTTGTGGCAAGAGCCAAGACGAAGTCAAAAAAATTAT
TGCAGGGAATAATGTTTTTATCTGTAATGAATGTGTGGCTTTGTCACAAGAAATTATTAAAGAAGAGTTGGCAGAAGAAG
TATTAGCTGATCTAACAGAAGTTCCAAAACCCAAAGAGCTCCTTGAGGTTTTAAACCAGTATGTTGTTGGCCAAGATCGT
GCCAAACGTGCTTTATCAGTAGCTGTTTACAATCATTACAAACGCGTATCATTCACGGAAAGTCGTGATGATGAAGATGT
GGAATTGCAAAAATCAAACATTTTAATGATTGGTCCAACAGGTTCAGGAAAGACTTTTCTGGCTCAAACCTTAGCTAAGA
GCTTAAATGTTCCCTTCGCGATTGCTGATGCAACCTCACTGACTGAAGCAGGGTATGTTGGAGAAGATGTGGAAAATATT
CTTCTCAAGCTTATCCAAGCAGCTGATTATAATGTGGAACGAGCAGAGCGTGGTATCATCTATGTCGATGAAATTGATAA
GATTGCTAAAAAAGGCGAAAATGTGTCCATCACACGTGATGTTTCTGGTGAGGGAGTTCAGCAGGCCTTACTAAAAATTA
TTGAAGGAACGGTTGCTAGTGTTCCTCCTCAAGGCGGTCGTAAGCATCCAAATCAGGAAATGATTCAAATTGATACCAAG
AATATCTTGTTTATTGTTGGGGGAGCCTTTGACGGCATTGAAGATATTGTCAAACAACGTTTAGGAGAAAAAGTCATTGG
TTTTGGTCAAAACAGCCGAAAAATCGACGACAATGCTTCTTATATGCAAGAGATTATTTCAGAAGATATCCAAAAATTTG
GTCTTATACCAGAGTTTATTGGACGCTTGCCAGTCGTAGCTGCTCTTGAACAACTAAACACATCAGATTTGATTCAGATT
TTGACAGAACCAAGAAATGCCCTAGTCAAGCAATATCAAGCTCTTCTTTCTTACGATGGCGTCGAATTGGCATTTGATAA
GGAAGCCTTAGAAGCCATTGCAAATAAAGCCATTGAGCGTAAGACAGGCGCGCGTGGTCTTCGTTCTATTATCGAAGAAA
CAATGTTAGACATTATGTTTGAAATTCCAAGCCAAGAAGATGTCATAAAAGTGCGTATCACCAAGGCTGCTGTCGAAGGC
AAGTCAAAACCCGTTTTAGAGACAGCGTAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-388)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	89.242	100	0.892
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.603	98.044	0.575