Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BI350_RS02665 Genome accession   NZ_CP017560
Coordinates   524682..525632 (+) Length   316 a.a.
NCBI ID   WP_075526725.1    Uniprot ID   -
Organism   Sporosarcina ureilytica strain LMG 22257     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 519682..530632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI350_RS02650 (BI350_02650) hflX 520144..521415 (+) 1272 WP_075526722.1 GTPase HflX -
  BI350_RS02655 (BI350_02655) - 521552..523270 (-) 1719 WP_075526723.1 ABC transporter ATP-binding protein -
  BI350_RS02660 (BI350_02660) - 523498..524349 (+) 852 WP_075526724.1 DUF6612 family protein -
  BI350_RS02665 (BI350_02665) ceuB 524682..525632 (+) 951 WP_075526725.1 ABC transporter permease Machinery gene
  BI350_RS02670 (BI350_02670) - 525625..526575 (+) 951 WP_075526726.1 iron chelate uptake ABC transporter family permease subunit -
  BI350_RS02675 (BI350_02675) - 526572..527333 (+) 762 WP_075526727.1 ATP-binding cassette domain-containing protein -
  BI350_RS02680 (BI350_02680) - 527359..528318 (+) 960 WP_075529201.1 siderophore ABC transporter substrate-binding protein -
  BI350_RS02685 (BI350_02685) - 528498..529700 (+) 1203 WP_075526728.1 MFS transporter -
  BI350_RS02690 (BI350_02690) - 529931..530578 (+) 648 WP_075526729.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34888.28 Da        Isoelectric Point: 10.1782

>NTDB_id=200321 BI350_RS02665 WP_075526725.1 524682..525632(+) (ceuB) [Sporosarcina ureilytica strain LMG 22257]
MKKRYLIIALIGFSLLSLFVGVSRITPMDLLDFKSEETEIFLISRLPRLIAIILAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATRLGILISMLMFANASTIEKMIVAFAFALAGTLLFMQILDRIKFKDAIFIPLVGLMFGNILSSVTTFFAYRADVI
QNMSAWLQGDFSMIMKGRFELLYISIPVLILAYVYANKFTVAGMGEDFSKNLGLAYRRVVNLGLILVALITTTVVLTVGM
IPFLGLIIPNIISIFQGDHLKKTLPHTALLGAIFLLICDILGRVLIYPYEISISLMVGVIGSGIFLYLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=200321 BI350_RS02665 WP_075526725.1 524682..525632(+) (ceuB) [Sporosarcina ureilytica strain LMG 22257]
ATGAAAAAACGTTATTTGATAATCGCATTGATAGGCTTCTCGCTACTTTCTTTATTCGTAGGCGTTAGCCGAATTACACC
GATGGATCTGCTAGATTTCAAATCAGAAGAAACAGAGATATTTTTAATTAGCCGATTGCCGAGATTGATCGCAATTATTC
TTGCTGGGGCAGGAATGAGTATTGCTGGACTAATCATGCAACAGCTAAGTCGAAATAAATTTGTTTCGCCGACAACAGCT
GGGACGCTAGATGCAACAAGGCTTGGAATTTTAATTTCCATGCTCATGTTTGCAAATGCTTCCACGATTGAAAAGATGAT
AGTCGCATTTGCATTTGCGTTAGCCGGCACGCTATTATTTATGCAAATTCTAGATCGGATTAAATTTAAAGATGCGATTT
TTATTCCGCTCGTCGGGCTCATGTTCGGTAATATTTTATCTTCGGTGACGACATTCTTTGCTTATCGAGCAGATGTCATT
CAAAATATGTCAGCGTGGTTACAAGGCGATTTTTCAATGATTATGAAAGGGCGCTTCGAGCTACTTTATATAAGTATCCC
GGTTTTAATCCTTGCTTATGTCTACGCGAATAAGTTTACAGTTGCAGGGATGGGCGAAGATTTCTCGAAAAATCTAGGAC
TTGCTTATAGAAGAGTCGTCAATCTTGGGTTAATCCTTGTGGCGTTAATTACGACAACAGTCGTGTTAACGGTCGGTATG
ATCCCATTTCTCGGGTTAATTATTCCGAATATTATTTCCATATTTCAAGGTGACCATTTAAAAAAGACGCTGCCACATAC
TGCGTTATTAGGCGCGATATTCCTACTCATTTGTGATATTTTAGGCCGGGTACTCATTTATCCATATGAAATCTCAATTA
GTTTAATGGTAGGGGTTATTGGTAGCGGGATATTCCTCTATTTGTTGTTTAGGAGGAAGGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.994

99.051

0.535

Multiple sequence alignment