Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CFI09_RS05910 Genome accession   NZ_CP022279
Coordinates   1148838..1149575 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain STEC299     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1143838..1154575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFI09_RS05875 (CFI09_05890) yfiL 1143996..1144361 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  CFI09_RS05880 (CFI09_05895) aroF 1144572..1145642 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CFI09_RS05885 (CFI09_05900) tyrA 1145653..1146774 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CFI09_RS05890 (CFI09_05905) pheA 1146817..1147977 (-) 1161 WP_000200125.1 bifunctional chorismate mutase/prephenate dehydratase -
  CFI09_RS05895 pheL 1148076..1148123 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CFI09_RS05900 (CFI09_05910) raiA 1148227..1148568 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CFI09_RS05910 (CFI09_05920) comL 1148838..1149575 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CFI09_RS05915 (CFI09_05925) rluD 1149710..1150690 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CFI09_RS05920 (CFI09_05930) yfiH 1150687..1151418 (+) 732 WP_000040144.1 purine nucleoside phosphorylase YfiH -
  CFI09_RS05925 (CFI09_05935) clpC 1151548..1154121 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=199897 CFI09_RS05910 WP_000197686.1 1148838..1149575(-) (comL) [Escherichia coli strain STEC299]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=199897 CFI09_RS05910 WP_000197686.1 1148838..1149575(-) (comL) [Escherichia coli strain STEC299]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment