Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CES94_RS06645 Genome accession   NZ_CP022154
Coordinates   1263220..1263957 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ABWA45     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1258220..1268957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CES94_RS06615 (CES94_06615) yfiL 1258377..1258742 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  CES94_RS06620 (CES94_06620) aroF 1258952..1260022 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CES94_RS06625 (CES94_06625) tyrA 1260033..1261154 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CES94_RS06630 (CES94_06630) pheA 1261197..1262357 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  CES94_RS29170 pheL 1262457..1262504 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CES94_RS06635 (CES94_06635) raiA 1262608..1262949 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CES94_RS06645 (CES94_06645) comL 1263220..1263957 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CES94_RS06650 (CES94_06650) rluD 1264092..1265072 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CES94_RS06655 (CES94_06655) yfiH 1265069..1265800 (+) 732 WP_000040142.1 purine nucleoside phosphorylase YfiH -
  CES94_RS06660 (CES94_06660) clpC 1265930..1268503 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=199548 CES94_RS06645 WP_000197686.1 1263220..1263957(-) (comL) [Escherichia coli strain ABWA45]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=199548 CES94_RS06645 WP_000197686.1 1263220..1263957(-) (comL) [Escherichia coli strain ABWA45]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACT
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCACTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment