Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   A6J94_RS01630 Genome accession   NZ_CP022080
Coordinates   337078..337743 (+) Length   221 a.a.
NCBI ID   WP_002853205.1    Uniprot ID   Q0P933
Organism   Campylobacter jejuni strain FDAARGOS_266     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 332078..342743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J94_RS01600 (A6J94_01600) htrA 332280..333698 (+) 1419 WP_002860448.1 serine protease HtrA -
  A6J94_RS01605 (A6J94_01605) - 333774..334448 (+) 675 WP_002853196.1 response regulator transcription factor -
  A6J94_RS01610 (A6J94_01610) - 334445..335692 (+) 1248 WP_002853920.1 ArsS family sensor histidine kinase -
  A6J94_RS08510 - 336081..336320 (-) 240 Protein_318 ribbon-helix-helix domain-containing protein -
  A6J94_RS01625 (A6J94_01625) - 336331..336930 (-) 600 WP_002866222.1 bacteriohemerythrin -
  A6J94_RS01630 (A6J94_01630) ciaR 337078..337743 (+) 666 WP_002853205.1 two-component system response regulator DccR Regulator
  A6J94_RS01635 (A6J94_01635) dccS 337736..338926 (+) 1191 WP_002866221.1 two-component system sensor histidine kinase DccS -
  A6J94_RS01640 (A6J94_01640) groL 338969..340606 (-) 1638 WP_002859291.1 chaperonin GroEL -
  A6J94_RS01645 (A6J94_01645) groES 340627..340887 (-) 261 WP_002825273.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25633.32 Da        Isoelectric Point: 4.6834

>NTDB_id=199407 A6J94_RS01630 WP_002853205.1 337078..337743(+) (ciaR) [Campylobacter jejuni strain FDAARGOS_266]
MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFM
TSLNTTNDLKQGFDAGCDDYIKKPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGYCYG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=199407 A6J94_RS01630 WP_002853205.1 337078..337743(+) (ciaR) [Campylobacter jejuni strain FDAARGOS_266]
ATGGCTGCTAAAATTTTACTTTTAGAAGATGATTTGAGCTTGAGTGAGATCATTGAAGAGTTTTTAAACGATGAAGGATA
TGAAGTATTTTTATGCGATAATGCACAAGAAGCTTTAGATATGGCTTATGAAAGATATTTTGATCTTTGGATTTTAGATG
TAAAAGTTCCTTTAGGAGATGGATTTTCATTACTTAAAGAATTAAGAAAAAGCGGAAAGCAAACTCCAGCAATTTTCATG
ACTTCTTTAAACACAACAAACGATTTAAAACAAGGCTTTGACGCAGGTTGTGATGATTATATAAAAAAACCTTTTGAACT
TGCCGAGTTATCTATCAGGGTTAAAGCTTTGCTTAAAAGAGCTTTTTCACATAAAAATGAAGATTTTGAAGATTTAGGAG
ATGGATTTAGATTTGAATTTACTACACAAATTCTTTACCATAATAATAAAGCCTTGACTTTACCGAGTAAAGAAATTAAG
CTTTTGTCTTTATTACTTAAAAATAAAAACAACTTTTTAAGCACAGAGAGAATTTTTGAAGAACTCTGGGATTATGATGA
GGAGCCTAGTGAGCTAAGTTTAAGAGCTTATGTAAAAAATTTACGTAAAATTTTAGGAAAAGAAAAAATTATAAATCAAA
GAGGCAGGGGATATTGCTATGGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P933

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae D39

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae R6

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae TIGR4

36.364

99.548

0.362