Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   BG566_RS04635 Genome accession   NZ_CP017507
Coordinates   921549..922952 (+) Length   467 a.a.
NCBI ID   WP_006251341.1    Uniprot ID   A0A378NHR6
Organism   Mannheimia haemolytica strain 28253     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 916549..927952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG566_RS04600 (BG566_04525) - 916622..917386 (-) 765 WP_006248395.1 TSUP family transporter -
  BG566_RS04605 (BG566_04530) proB 917386..918477 (-) 1092 WP_006251346.1 glutamate 5-kinase -
  BG566_RS04610 (BG566_04535) folA 918589..919083 (+) 495 WP_006248397.1 type 3 dihydrofolate reductase -
  BG566_RS04615 (BG566_04540) - 919203..919433 (+) 231 WP_006251345.1 YgjV family protein -
  BG566_RS04620 (BG566_04545) radA 919488..920867 (-) 1380 WP_006251344.1 DNA repair protein RadA -
  BG566_RS04630 (BG566_04550) pilA 921049..921528 (+) 480 WP_020831302.1 prepilin peptidase-dependent pilin Machinery gene
  BG566_RS04635 (BG566_04555) pilB 921549..922952 (+) 1404 WP_006251341.1 GspE/PulE family protein Machinery gene
  BG566_RS04640 (BG566_04560) pilC 922936..924132 (+) 1197 WP_006248403.1 type II secretion system F family protein Machinery gene
  BG566_RS04645 (BG566_04565) - 924135..924791 (+) 657 WP_006248404.1 prepilin peptidase -
  BG566_RS04650 (BG566_04570) coaE 924827..925462 (+) 636 WP_020831305.1 dephospho-CoA kinase -
  BG566_RS04655 (BG566_04575) yacG 925444..925629 (+) 186 WP_006248406.1 DNA gyrase inhibitor YacG -
  BG566_RS04660 (BG566_04580) holA 925630..926655 (-) 1026 WP_032844853.1 DNA polymerase III subunit delta -
  BG566_RS04665 (BG566_04585) lptE 926698..927186 (-) 489 WP_006251337.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52965.62 Da        Isoelectric Point: 5.5059

>NTDB_id=199269 BG566_RS04635 WP_006251341.1 921549..922952(+) (pilB) [Mannheimia haemolytica strain 28253]
MEYSVTDLNSQRFIEISAEQWQKNCNEKQILLRYLAVPLQETAEQLWLGIDDMQNLNACEIFAFIYHKQIEPVLISSEEL
KFLLNALSPEQSSPQSEIYEENPLYPFSENTEQPDRNDPIIQILENLFKFCLQQNASDIHLEPQKERLLIRLRIDGVLHI
YKSLPSSLSSRLISRVKLLAKLDISETRLPQDGQFHFKTLLAETLDFRVSTLPTHFGEKVVLRLQKNKPTHFDFLDLGFN
PTQKANLLNALSQPQGLILVTGPTGSGKSITLYSALSHLNSSEKHILTAEDPIEIEIEGIIQTQVNRGINLDFSQLLRTF
LRQDPDIIMLGEIRDEESAEMALRAAQTGHLVLSTLHTNDAPSAVERLLQLGIKEYELKNSLLLVIAQRLLRRVCVKCGG
AGCEHCYQGYKGRIGVYQLLNRSAKNFEKNTACLDFKTLADSAKEKLTEGKTNQAEILRVLGNDENL

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=199269 BG566_RS04635 WP_006251341.1 921549..922952(+) (pilB) [Mannheimia haemolytica strain 28253]
ATGGAGTATTCGGTAACCGACTTAAACAGCCAAAGATTCATCGAGATTTCAGCAGAACAATGGCAGAAAAATTGTAATGA
AAAGCAGATTTTGTTGCGTTACTTAGCCGTTCCACTGCAAGAAACAGCAGAACAGCTTTGGCTGGGAATTGATGATATGC
AAAATCTTAATGCCTGCGAGATTTTTGCATTTATCTACCACAAACAGATTGAGCCTGTTTTGATTTCCTCCGAAGAATTA
AAATTTTTGCTCAATGCCCTTTCGCCTGAACAGAGTAGCCCGCAGAGTGAAATTTATGAAGAAAATCCGCTTTATCCTTT
TTCCGAGAATACCGAGCAGCCGGATAGAAATGATCCGATCATCCAAATTTTAGAGAATTTGTTTAAGTTCTGTTTGCAAC
AGAACGCTTCCGATATCCATCTTGAACCACAAAAAGAGAGATTGTTAATTCGGTTAAGAATTGATGGCGTGCTACATATT
TATAAAAGCCTGCCGAGTAGTTTATCCAGCCGTTTGATTTCACGGGTTAAATTATTGGCTAAGCTCGATATCAGCGAGAC
TCGTTTGCCACAAGACGGACAATTTCATTTCAAAACACTGTTAGCTGAAACGCTGGATTTCCGTGTTTCTACCTTGCCAA
CGCACTTCGGCGAAAAAGTGGTGCTACGGCTACAAAAAAATAAACCAACCCATTTTGATTTTTTAGATTTAGGCTTTAAC
CCAACTCAGAAAGCCAATTTGCTGAATGCTTTGAGTCAGCCTCAAGGATTGATTTTAGTAACCGGCCCGACAGGAAGCGG
TAAAAGCATCACGCTTTACAGTGCATTAAGCCATTTAAACAGCAGTGAAAAGCATATTTTGACTGCCGAAGACCCGATTG
AAATTGAGATTGAGGGAATTATCCAAACCCAAGTGAATCGAGGGATTAACTTAGATTTCAGCCAACTGTTAAGAACCTTT
CTACGCCAAGATCCGGACATTATTATGCTCGGCGAAATTCGTGATGAAGAGAGTGCAGAAATGGCACTACGGGCGGCACA
AACCGGGCATTTGGTGCTTTCGACTTTGCACACCAATGATGCCCCTTCAGCGGTAGAACGGTTGCTACAGCTCGGCATAA
AAGAGTATGAACTTAAAAATTCATTGCTACTCGTGATTGCTCAACGCCTGTTACGCCGAGTGTGTGTGAAATGCGGTGGG
GCAGGCTGTGAGCATTGTTATCAAGGGTATAAAGGGCGAATTGGGGTATATCAACTCTTAAACCGATCTGCAAAAAATTT
TGAAAAAAACACCGCTTGTTTGGATTTTAAAACCCTTGCCGACAGTGCAAAAGAAAAATTGACGGAAGGAAAAACCAATC
AGGCGGAAATTTTAAGGGTGCTAGGCAATGACGAAAATCTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(29-92)

Type II/IV secretion system protein (T2SSE)

(132-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378NHR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Glaesserella parasuis strain SC1401

72.451

98.715

0.715
  pilB Haemophilus influenzae Rd KW20

56.71

98.929

0.561
  pilB Haemophilus influenzae 86-028NP

55.94

99.143

0.555
  pilB Vibrio campbellii strain DS40M4

40.748

100

0.42
  pilB Vibrio cholerae strain A1552

40.249

100

0.415
  pilB Legionella pneumophila strain ERS1305867

39.754

100

0.415
  pilB Vibrio parahaemolyticus RIMD 2210633

38.755

100

0.413
  pilB Acinetobacter baylyi ADP1

35.928

100

0.385
  pilB Acinetobacter baumannii D1279779

36.401

100

0.381

Multiple sequence alignment