Detailed information NTG0198720

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: BIZ42_RS14910
• Genome accession: NZ_CP017483
• Coordinates: 3377442..3378821 (+)
• Length: 459 a.a.
• NCBI ID: WP_070426878.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. LM091
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3372442..3383821

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BIZ42_RS14895 (BIZ42_14895)	cyoC	3373961..3374602 (+)	642	WP_070426876.1	cytochrome o ubiquinol oxidase subunit III	-
BIZ42_RS14900 (BIZ42_14900)	cyoD	3374602..3374952 (+)	351	WP_019184497.1	cytochrome o ubiquinol oxidase subunit IV	-
BIZ42_RS14905 (BIZ42_14905)	-	3375229..3377292 (-)	2064	WP_070426877.1	EAL domain-containing protein	-
BIZ42_RS14910 (BIZ42_14910)	radA	3377442..3378821 (+)	1380	WP_070426878.1	DNA repair protein RadA	Machinery gene
BIZ42_RS14915 (BIZ42_14915)	-	3378946..3380800 (+)	1855	Protein_2951	ATP-binding protein	-
BIZ42_RS14920 (BIZ42_14920)	-	3380851..3383157 (+)	2307	WP_070426879.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 48518.80 Da
• Isoelectric Point: 7.0903

>NTDB_id=198720 BIZ42_RS14910 WP_070426878.1 3377442..3378821(+) (radA) [Stenotrophomonas sp. LM091]
MAKRLTAYVCSECGAEYSKWQGQCTECGVWNTLSEITLESATPTKASPASRRSGWAGKVDAPKIMALKDVQQTEHLRVST
GIGEFDRVLGGGLVEGAVVLVGGDPGIGKSTLLLQAVAKMAASLPVLYITGEESLSQVAGRAVRLDLPLDNVNALAETQV
EAILQHASVAKPRLIVADSVQTLWTESLTAAPGSVSQVRESAARLVRFAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSTQQPGSCVMVTREGTRPLLVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGVLVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLQDRPLAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGSVKGMEVIAVERLSEAIDAL

Nucleotide

• Length: 1380 bp

>NTDB_id=198720 BIZ42_RS14910 WP_070426878.1 3377442..3378821(+) (radA) [Stenotrophomonas sp. LM091]
ATGGCCAAGCGACTCACCGCTTACGTCTGCAGCGAATGCGGCGCCGAATACAGCAAGTGGCAGGGCCAGTGCACCGAGTG
CGGCGTCTGGAACACGCTGAGCGAGATCACGCTGGAAAGCGCCACGCCCACCAAGGCGTCGCCGGCGTCGCGGCGTTCCG
GCTGGGCCGGCAAGGTCGATGCGCCGAAGATCATGGCGCTCAAGGACGTGCAGCAGACCGAACACCTGCGGGTGAGCACG
GGCATCGGTGAGTTCGACCGCGTGCTCGGCGGTGGCCTGGTCGAAGGTGCGGTGGTGCTGGTCGGTGGCGATCCGGGTAT
CGGCAAGTCCACCCTGCTGTTGCAGGCCGTGGCGAAGATGGCCGCGTCGCTGCCGGTGCTGTACATCACCGGTGAGGAAT
CGCTGTCGCAGGTGGCCGGCCGTGCAGTGCGTCTGGACCTGCCGCTGGATAACGTCAACGCGCTGGCCGAAACCCAGGTG
GAGGCGATCCTCCAGCATGCCAGCGTGGCCAAGCCGCGGCTGATCGTGGCCGACTCGGTACAGACGCTGTGGACCGAATC
GCTCACCGCCGCGCCCGGCTCGGTCAGCCAGGTGCGCGAGAGCGCCGCACGGCTGGTGCGCTTCGCCAAGGAAACCGGCA
CCGCCGTGTTCCTGGTCGGTCACGTGACCAAGGAAGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCATATGGTCGATGCG
GTGCTGTACTTCGAAGGCGAGAGCGGCAGCCGGTTCCGCCTGCTGCGCGCCTTCAAGAACCGCTTCGGCGCGGTCAACGA
ACTGGGCGTGTTCGCCATGGGCGAGAAGGGCCTGAAAGAGGTCTCCAATCCCTCGGCGATCTTCCTCTCCGGCGGCAGCA
CCCAGCAGCCGGGCAGCTGCGTGATGGTCACCCGCGAGGGCACGCGCCCGCTGCTGGTGGAAGTGCAGGCACTGGTGGAC
GCCTCGCCGCTGTCCAACCCACGCCGCGTCGCGGTGGGTCTGGAGCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCA
CCGTCATGGCGGCGTGCTCGTGGGCGACCAGGACGTGTTCGTCAACGTGGTGGGCGGCATCCGCGTGCAGGAGACTGCGG
CCGATCTGCCCGTGCTGCTGGCGGTGCTGTCTTCGTTGCAGGACCGGCCATTGGCAGAGAAGACGATCGCCTTCGGCGAG
GTGGGACTGTCCGGCGAGATCCGCCCGGTGCCCAACGGTGAGGATCGCCTGCGCGAGGCAGCTACGCATGGCTTCAAGCG
CGCCATCGTGCCCAAGGCGAACGCGCCGAAGACCGGCAGCGTGAAGGGGATGGAAGTGATCGCGGTGGAGCGGCTGTCCG
AGGCGATCGACGCGCTGTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (88-226)

• Subunit ChlI of Mg-chelatase (ChlI) (351-434)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.253	99.782	0.481
radA	Streptococcus mitis NCTC 12261	42.982	99.346	0.427
radA	Streptococcus pneumoniae Rx1	42.982	99.346	0.427
radA	Streptococcus pneumoniae D39	42.982	99.346	0.427
radA	Streptococcus pneumoniae R6	42.982	99.346	0.427
radA	Streptococcus pneumoniae TIGR4	42.982	99.346	0.427
radA	Streptococcus mitis SK321	42.763	99.346	0.425