Detailed information NTG0198687

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BJK05_RS09830
• Genome accession: NZ_CP017482
• Coordinates: 2168693..2169538 (-)
• Length: 281 a.a.
• NCBI ID: WP_095700110.1
• Uniprot ID: -
• Organism: Pectobacterium polaris strain NIBIO1392
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2163693..2174538

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJK05_RS09810 (BJK05_09470)	-	2163854..2164624 (-)	771	WP_095700106.1	ABC transporter ATP-binding protein	-
BJK05_RS09815 (BJK05_09475)	-	2164626..2165663 (-)	1038	WP_095700107.1	iron ABC transporter permease	-
BJK05_RS09820 (BJK05_09480)	-	2165660..2166724 (-)	1065	WP_095700108.1	ABC transporter substrate-binding protein	-
BJK05_RS09825 (BJK05_09485)	-	2167076..2168101 (+)	1026	WP_095700109.1	LLM class flavin-dependent oxidoreductase	-
BJK05_RS22625	ypdK	2168458..2168532 (+)	75	WP_099606229.1	membrane protein YpdK	-
BJK05_RS09830 (BJK05_09490)	pilD	2168693..2169538 (-)	846	WP_095700110.1	A24 family peptidase	Machinery gene
BJK05_RS09835 (BJK05_09495)	-	2169628..2170374 (-)	747	WP_095700111.1	type II secretion system protein N	-
BJK05_RS09840 (BJK05_09500)	gspM	2170364..2170858 (-)	495	WP_095700112.1	type II secretion system protein GspM	-
BJK05_RS09845 (BJK05_09505)	gspL	2170855..2172132 (-)	1278	WP_095700113.1	type II secretion system protein GspL	-
BJK05_RS09850 (BJK05_09510)	gspK	2172129..2173115 (-)	987	WP_010302966.1	type II secretion system minor pseudopilin GspK	-
BJK05_RS09855 (BJK05_09515)	gspJ	2173112..2173762 (-)	651	WP_095700114.1	type II secretion system minor pseudopilin GspJ	-
BJK05_RS09860 (BJK05_09520)	gspI	2173762..2174127 (-)	366	WP_095700115.1	type II secretion system minor pseudopilin GspI	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31270.10 Da
• Isoelectric Point: 7.0813

>NTDB_id=198687 BJK05_RS09830 WP_095700110.1 2168693..2169538(-) (pilD) [Pectobacterium polaris strain NIBIO1392]
MDDLREFAQLFPAWWFGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELETGVADSDRDTRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSAQYPLVEVITMLAFLAAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWIGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLVWRGLRKEDTAKPLAFGPWLAIGGVFGVIMNGFNL

Nucleotide

• Length: 846 bp

>NTDB_id=198687 BJK05_RS09830 WP_095700110.1 2168693..2169538(-) (pilD) [Pectobacterium polaris strain NIBIO1392]
GTGGACGATTTAAGGGAATTCGCACAGCTGTTTCCGGCGTGGTGGTTTGGGGCGCTGGGCGTGTTGGGGTTGATTGTTGG
CAGTTTTCTGAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAACGG
GCGTGGCCGATTCCGATCGTGATACGCGCTACAACCTGTGGTGGCCGCCTTCATCTTGCCCGCACTGCCAGCAGGCTATT
GCGGTAAAAGATAATATCCCGCTATTCAGCTGGCTGTGGCTGCGCGGCCGCTCCCGCTGCTGCCATCAATCGGTCTCTGC
GCAATATCCGTTAGTGGAAGTCATCACCATGCTGGCTTTTCTGGCGGCAGGTTTGCTCTGGTTGCCCGGTATGGCGCTGT
GGGGGGCGTTGATTTTGCTGTCCTTCCTGTTGGTGCTGACCGTTATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACACTGTCGCTTCTGTGGATAGGGTTGCTGTTTAATCTGTCGGGCACATTTGTCTCATTGAATGATGCCGTAGTCGGCGC
GATGGCTGGTTATTTATCTCTGTGGCTACTTTATTGGGCATTCAAATACGCCACGGGCAAAGAAGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTTTTGGTGGCAGCGTTGAGC
GGTCTGGTCGTGACTCTCGTCTGGCGCGGGTTGCGTAAAGAGGATACGGCTAAACCGCTGGCCTTTGGCCCCTGGCTGGC
AATCGGCGGGGTGTTCGGCGTGATAATGAACGGATTCAATTTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.923	96.441	0.491
pilD	Vibrio campbellii strain DS40M4	46.494	96.441	0.448
pilD	Neisseria gonorrhoeae MS11	46.743	92.883	0.434
pilD	Acinetobacter baumannii D1279779	43.223	97.153	0.42
pilD	Acinetobacter nosocomialis M2	42.857	97.153	0.416