Detailed information NTG0198676

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BJJ97_RS19915
• Genome accession: NZ_CP017481
• Coordinates: 4416161..4417006 (-)
• Length: 281 a.a.
• NCBI ID: WP_095995074.1
• Uniprot ID: -
• Organism: Pectobacterium polaris strain NIBIO1006
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4411161..4422006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJJ97_RS19895 (BJJ97_19420)	-	4411337..4412107 (-)	771	WP_095995070.1	ABC transporter ATP-binding protein	-
BJJ97_RS19900 (BJJ97_19425)	-	4412109..4413146 (-)	1038	WP_095995071.1	iron ABC transporter permease	-
BJJ97_RS19905 (BJJ97_19430)	-	4413143..4414207 (-)	1065	WP_095995072.1	ABC transporter substrate-binding protein	-
BJJ97_RS19910 (BJJ97_19435)	-	4414558..4415583 (+)	1026	WP_095995073.1	LLM class flavin-dependent oxidoreductase	-
BJJ97_RS21935	ypdK	4415941..4416015 (+)	75	WP_099606229.1	membrane protein YpdK	-
BJJ97_RS19915 (BJJ97_19440)	pilD	4416161..4417006 (-)	846	WP_095995074.1	A24 family peptidase	Machinery gene
BJJ97_RS19920 (BJJ97_19445)	-	4417100..4417846 (-)	747	WP_095995075.1	type II secretion system protein N	-
BJJ97_RS19925 (BJJ97_19450)	gspM	4417836..4418330 (-)	495	WP_095995076.1	type II secretion system protein GspM	-
BJJ97_RS19930 (BJJ97_19455)	gspL	4418327..4419604 (-)	1278	WP_095995077.1	type II secretion system protein GspL	-
BJJ97_RS19935 (BJJ97_19460)	gspK	4419601..4420587 (-)	987	WP_095995078.1	type II secretion system minor pseudopilin GspK	-
BJJ97_RS19940 (BJJ97_19465)	gspJ	4420584..4421183 (-)	600	WP_223806356.1	type II secretion system minor pseudopilin GspJ	-
BJJ97_RS19945 (BJJ97_19470)	gspI	4421234..4421599 (-)	366	WP_095995080.1	type II secretion system minor pseudopilin GspI	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31354.28 Da
• Isoelectric Point: 5.7643

>NTDB_id=198676 BJJ97_RS19915 WP_095995074.1 4416161..4417006(-) (pilD) [Pectobacterium polaris strain NIBIO1006]
MDDLREFAQLFPAWWFGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELEAGMADSDPDTRYNLCWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLTAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSETFVSLNDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLVWRGLRKEDTAKPLAFGPWLAMGGVFSVIMNGFNL

Nucleotide

• Length: 846 bp

>NTDB_id=198676 BJJ97_RS19915 WP_095995074.1 4416161..4417006(-) (pilD) [Pectobacterium polaris strain NIBIO1006]
GTGGACGATTTAAGGGAATTCGCACAGCTGTTTCCGGCGTGGTGGTTTGGGGCGCTGGGCGTGTTGGGGTTGATTGTTGG
TAGTTTTCTGAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAGCGG
GCATGGCCGATTCCGATCCTGATACGCGCTACAACCTGTGTTGGCCGCCTTCGTCTTGCCCGCACTGCCAGCAGGCTATT
GCAGTGAAAGATAACATCCCGCTATTCAGTTGGCTGTGGTTGCGAGGCCGCTCCCGCTGCTGTCATCAATCGGTGTCTGT
GCAATATCCGTTAGTGGAAGTCATCACTATGCTGGCTTTTCTGACGGCGGGTTTGCTCTGGTTGCCCGGTATGGCGTTGT
GGGGGGCATTGATTCTGCTGTCTTTCCTGCTGGTGCTGACCGTTATTGATATCAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATGGGACTGCTGTTTAATCTATCGGAGACCTTTGTCTCATTGAATGATGCCGTAGTCGGCGC
GATGGCTGGTTATTTATCTCTATGGCTACTTTATTGGGTATTCAAATACGCAACGGGCAAAGAGGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGTTGGGTGCCTGGCTGGGTTGGCAGGCATTGCCGAATCTGGTTTTGGTGGCAGCGTTGAGC
GGGTTGGTCGTTACTCTTGTCTGGCGTGGGTTGCGTAAAGAGGATACGGCTAAACCGCTGGCCTTTGGCCCCTGGCTGGC
AATGGGCGGCGTGTTCAGCGTGATAATGAACGGATTCAATCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.554	96.441	0.488
pilD	Vibrio campbellii strain DS40M4	45.818	97.865	0.448
pilD	Neisseria gonorrhoeae MS11	46.743	92.883	0.434
pilD	Acinetobacter baumannii D1279779	42.491	97.153	0.413
pilD	Acinetobacter nosocomialis M2	42.125	97.153	0.409