Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BJI69_RS03455 Genome accession   NZ_CP017480
Coordinates   722378..723778 (+) Length   466 a.a.
NCBI ID   WP_046968823.1    Uniprot ID   -
Organism   Luteibacter rhizovicinus DSM 16549 strain LJ96     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 717378..728778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJI69_RS03435 (BJI69_03430) - 717693..718136 (-) 444 WP_046968819.1 SRPBCC family protein -
  BJI69_RS03440 (BJI69_03435) sucD 718342..719214 (-) 873 WP_046968820.1 succinate--CoA ligase subunit alpha -
  BJI69_RS03445 (BJI69_03440) sucC 719228..720388 (-) 1161 WP_046968821.1 ADP-forming succinate--CoA ligase subunit beta -
  BJI69_RS03450 (BJI69_03445) - 720667..722310 (+) 1644 WP_046968822.1 HAMP domain-containing sensor histidine kinase -
  BJI69_RS03455 (BJI69_03450) pilR 722378..723778 (+) 1401 WP_046968823.1 sigma-54 dependent transcriptional regulator Regulator
  BJI69_RS03460 (BJI69_03455) - 723845..724246 (-) 402 WP_046968824.1 hypothetical protein -
  BJI69_RS03465 (BJI69_03460) - 724387..725529 (-) 1143 WP_046968825.1 M23 family metallopeptidase -
  BJI69_RS03470 (BJI69_03465) - 725674..727224 (-) 1551 WP_046968826.1 response regulator -
  BJI69_RS03475 (BJI69_03470) - 727258..727704 (-) 447 WP_046968827.1 response regulator -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 50392.79 Da        Isoelectric Point: 5.7775

>NTDB_id=198646 BJI69_RS03455 WP_046968823.1 722378..723778(+) (pilR) [Luteibacter rhizovicinus DSM 16549 strain LJ96]
MSKQTVLVIDDERDIRELLTITLGRMELDVDAVGSVNEARSALANRRYDLCFTDMRLPDGSGQEIIELIAANHPDMPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIHLLRRLVRTALKLSEERRAEAGSKGGPGADRLIGDSQAMAEVRSKIAKLARN
QAPVYIGGESGVGKELVARLIHELGPRAPGAFVPVNCGAIPSELMESEFFGHRKGSFTGAHADKEGLFQAAQGGTLFLDE
VAELPLHMQVKLLRAIQEKAVRPIGGRDEIPVDVRILSATHKNLAALVEEGLFRQDLFYRINVIELRVPPLRDRRGDVPA
LAEFILRQLASESGGAPGRLRADALAALEAYQFPGNVRELENILERAMAMCEGDTIEADDLMLPQRAAVAAPASPASPDA
VAAQAGAPAPRVAATDGSLEDYISNIERDTIIKALEESRYNKTATAKKLGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=198646 BJI69_RS03455 WP_046968823.1 722378..723778(+) (pilR) [Luteibacter rhizovicinus DSM 16549 strain LJ96]
ATGAGCAAGCAGACCGTTCTGGTCATCGACGACGAGCGGGACATCCGTGAGTTGCTGACCATCACCCTCGGTCGAATGGA
ACTCGACGTCGACGCCGTGGGGAGCGTCAACGAAGCGCGGAGCGCACTCGCCAATCGCCGTTACGACCTGTGTTTCACCG
ACATGCGGCTGCCCGACGGCAGCGGCCAGGAAATCATCGAGCTGATCGCGGCCAACCACCCCGACATGCCGGTGGCGATG
ATTACCGCCTACGGCAACGTGGACGCGGCAGTGAACGCCCTGAAGGCCGGTGCCTTCGATTTCGTGTCCAAGCCGGTGGA
TATCCACCTGCTACGCCGCCTGGTGCGCACGGCGCTGAAGCTCTCCGAGGAGCGCCGGGCCGAAGCCGGTAGCAAGGGTG
GCCCGGGCGCCGACCGCCTGATCGGCGATTCGCAGGCCATGGCCGAGGTCCGCTCGAAGATCGCCAAGCTCGCCCGCAAC
CAGGCCCCGGTCTACATCGGCGGCGAGTCCGGCGTGGGCAAGGAACTGGTTGCCCGGCTCATCCACGAACTGGGCCCGCG
TGCGCCCGGTGCGTTCGTGCCGGTCAACTGCGGCGCGATTCCGTCCGAATTGATGGAGAGCGAGTTCTTCGGTCACCGCA
AGGGCAGCTTCACGGGCGCCCATGCCGACAAGGAAGGCCTGTTCCAGGCAGCCCAGGGCGGCACCCTGTTCCTCGACGAA
GTCGCCGAGCTGCCGCTGCACATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAGGCGGTTCGTCCGATCGGCGGACG
CGACGAGATTCCGGTCGACGTGCGCATTCTTTCGGCCACGCACAAGAACCTTGCGGCGCTGGTCGAGGAAGGCCTGTTCC
GCCAGGATCTGTTCTACCGCATCAACGTGATCGAGCTGCGTGTGCCGCCGCTGCGCGATCGCCGCGGCGACGTCCCTGCC
CTCGCCGAATTCATCCTCCGCCAGCTCGCCTCGGAGTCCGGCGGCGCGCCGGGCCGCCTGCGCGCCGACGCATTGGCGGC
CCTCGAGGCCTACCAGTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCATGGCCATGTGCGAAGGCG
ACACGATCGAAGCCGACGACCTGATGCTGCCGCAGCGTGCGGCCGTCGCGGCACCGGCGAGCCCTGCGTCGCCCGATGCC
GTCGCCGCCCAGGCAGGCGCACCCGCGCCACGCGTGGCCGCGACCGATGGCTCGCTCGAAGACTACATCTCCAATATCGA
GCGCGACACGATCATCAAGGCACTCGAAGAGTCGCGCTACAACAAGACGGCAACGGCGAAGAAGCTGGGCATCACCTTCC
GCGCGCTGCGCTACAAGTTGAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(424-463)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.017

100

0.62
  pilR Acinetobacter baumannii strain A118

47.835

99.142

0.474

Multiple sequence alignment