Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM434_RS01470 Genome accession   NZ_CP021935
Coordinates   258642..259118 (+) Length   158 a.a.
NCBI ID   WP_001186200.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 253642..264118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM434_RS01435 (AM434_01450) istB 255170..255916 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  AM434_RS01440 (AM434_01455) - 255999..256349 (+) 351 Protein_259 hypothetical protein -
  AM434_RS01445 (AM434_01460) - 256365..256775 (+) 411 WP_000846703.1 hypothetical protein -
  AM434_RS01455 (AM434_01470) - 256996..257814 (+) 819 WP_001542275.1 DUF932 domain-containing protein -
  AM434_RS01460 (AM434_01475) - 257814..258059 (+) 246 WP_001164966.1 hypothetical protein -
  AM434_RS01465 (AM434_01480) - 258153..258626 (+) 474 WP_001542276.1 antirestriction protein -
  AM434_RS01470 (AM434_01485) radC 258642..259118 (+) 477 WP_001186200.1 RadC family protein Machinery gene
  AM434_RS01475 (AM434_01490) yeeT 259181..259402 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  AM434_RS01480 (AM434_01495) - 259421..260065 (+) 645 WP_000086752.1 hypothetical protein -
  AM434_RS01485 (AM434_01500) cbeA 260081..260449 (+) 369 WP_001280918.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM434_RS01490 (AM434_01505) cbtA 260538..260912 (+) 375 WP_000854815.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  AM434_RS01495 (AM434_01510) yeeW 260909..261103 (+) 195 WP_000988600.1 DUF5983 family protein -
  AM434_RS29300 - 261149..261229 (+) 81 Protein_270 hypothetical protein -
  AM434_RS01505 (AM434_01520) - 261718..261870 (+) 153 WP_050482493.1 EutP/PduV family microcompartment system protein -
  AM434_RS01510 (AM434_01525) - 261952..262377 (+) 426 WP_000422741.1 transposase -
  AM434_RS01515 (AM434_01530) tnpB 262374..262724 (+) 351 WP_000624722.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17764.39 Da        Isoelectric Point: 7.6152

>NTDB_id=198542 AM434_RS01470 WP_001186200.1 258642..259118(+) (radC) [Escherichia coli strain AR_0055]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=198542 AM434_RS01470 WP_001186200.1 258642..259118(+) (radC) [Escherichia coli strain AR_0055]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment