Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   BJG87_RS08595 Genome accession   NZ_CP017463
Coordinates   1778374..1778943 (-) Length   189 a.a.
NCBI ID   WP_046466530.1    Uniprot ID   A0AAW7YT24
Organism   Staphylococcus pasteuri strain JS7     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1773374..1783943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJG87_RS13325 - 1773406..1773507 (+) 102 WP_017638068.1 SAR1012 family small protein -
  BJG87_RS08555 (BJG87_08405) - 1773561..1774166 (-) 606 WP_046466534.1 FMN-binding negative transcriptional regulator -
  BJG87_RS08560 (BJG87_08410) - 1774183..1774614 (-) 432 WP_096807819.1 GNAT family N-acetyltransferase -
  BJG87_RS08565 (BJG87_08415) - 1774677..1775849 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  BJG87_RS08575 (BJG87_08425) - 1776040..1776492 (-) 453 WP_046466532.1 MarR family winged helix-turn-helix transcriptional regulator -
  BJG87_RS08580 (BJG87_08430) - 1776795..1777151 (+) 357 WP_046466531.1 DoxX family protein -
  BJG87_RS13345 - 1777221..1777355 (+) 135 WP_256219674.1 hypothetical protein -
  BJG87_RS08595 (BJG87_08445) comK/comK1 1778374..1778943 (-) 570 WP_046466530.1 competence protein ComK Regulator
  BJG87_RS08600 (BJG87_08450) - 1779162..1779380 (+) 219 WP_017637367.1 IDEAL domain-containing protein -
  BJG87_RS08605 (BJG87_08455) - 1779459..1780445 (-) 987 WP_046466529.1 lipoate--protein ligase -
  BJG87_RS08610 (BJG87_08460) - 1780649..1780834 (+) 186 WP_002450747.1 YkvS family protein -
  BJG87_RS08615 (BJG87_08465) - 1780840..1781442 (+) 603 WP_017637369.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  BJG87_RS08620 (BJG87_08470) - 1781599..1783107 (-) 1509 WP_017637370.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22485.74 Da        Isoelectric Point: 9.4950

>NTDB_id=198531 BJG87_RS08595 WP_046466530.1 1778374..1778943(-) (comK/comK1) [Staphylococcus pasteuri strain JS7]
MTTQSIYVIRKGDMVIRPNYDENNQQNGSEILRYDKSIIQSPFKVQKIIERSCKFYGNNYLSKKAETNRITGISSKPPIL
LTPIFPTYFFPTHSDRQEENLWINMHYVESIKELKHRKCKITFANNETIVLNISFHSLWHQYTNAIIFYYMVDKQSRMKS
NDPDKPIDYEKFSLNIFEALSRYSLFVDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=198531 BJG87_RS08595 WP_046466530.1 1778374..1778943(-) (comK/comK1) [Staphylococcus pasteuri strain JS7]
ATGACAACTCAGAGTATTTACGTTATTAGAAAGGGAGATATGGTTATCAGACCTAACTATGATGAAAATAATCAGCAAAA
TGGTTCTGAAATATTAAGGTATGATAAGTCAATTATTCAGAGTCCATTTAAGGTTCAAAAGATTATTGAAAGATCATGCA
AATTTTACGGTAATAATTATTTAAGTAAAAAAGCAGAAACTAATCGTATTACAGGTATTTCTAGTAAACCCCCAATTTTA
TTAACACCCATTTTTCCTACTTATTTTTTCCCAACACATTCTGACAGGCAAGAAGAAAATTTATGGATTAACATGCATTA
TGTTGAATCAATTAAAGAATTAAAACATCGTAAATGTAAAATCACATTTGCTAATAATGAAACGATTGTTTTGAACATAT
CATTTCACAGTTTATGGCATCAATACACCAATGCAATTATCTTTTATTACATGGTTGATAAACAATCCCGCATGAAATCA
AATGACCCCGATAAACCTATTGATTATGAAAAATTCTCTTTAAATATTTTTGAAGCACTTTCACGTTATTCCCTATTTGT
AGACAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(6-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

77.249

100

0.772
  comK/comK1 Staphylococcus aureus N315

77.249

100

0.772

Multiple sequence alignment