Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BJG87_RS07555 Genome accession   NZ_CP017463
Coordinates   1565386..1566255 (-) Length   289 a.a.
NCBI ID   WP_017638386.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain JS7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1529111..1601140 1565386..1566255 within 0


Gene organization within MGE regions


Location: 1529111..1601140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJG87_RS07410 (BJG87_07280) - 1529543..1530256 (-) 714 WP_046466620.1 GntR family transcriptional regulator -
  BJG87_RS07415 (BJG87_07285) - 1530259..1532661 (-) 2403 WP_046466619.1 DNA translocase FtsK -
  BJG87_RS07420 (BJG87_07290) rnjB 1532916..1534589 (-) 1674 WP_046466618.1 ribonuclease J2 -
  BJG87_RS07430 (BJG87_07295) pnp 1534763..1536862 (-) 2100 WP_017638361.1 polyribonucleotide nucleotidyltransferase -
  BJG87_RS07435 (BJG87_07300) rpsO 1536998..1537267 (-) 270 WP_046466617.1 30S ribosomal protein S15 -
  BJG87_RS07440 (BJG87_07305) ribF 1537380..1538351 (-) 972 WP_029055438.1 riboflavin biosynthesis protein RibF -
  BJG87_RS07445 (BJG87_07310) truB 1538364..1539281 (-) 918 WP_029055439.1 tRNA pseudouridine(55) synthase TruB -
  BJG87_RS07450 (BJG87_07315) rbfA 1539445..1539795 (-) 351 WP_017638365.1 30S ribosome-binding factor RbfA -
  BJG87_RS07455 (BJG87_07320) infB 1539927..1542101 (-) 2175 WP_046466616.1 translation initiation factor IF-2 -
  BJG87_RS07460 (BJG87_07325) - 1542106..1542420 (-) 315 WP_017638367.1 L7Ae/L30e/S12e/Gadd45 family ribosomal protein -
  BJG87_RS07465 (BJG87_07330) rnpM 1542420..1542704 (-) 285 WP_017638368.1 RNase P modulator RnpM -
  BJG87_RS07470 (BJG87_07335) nusA 1542724..1543956 (-) 1233 WP_046466615.1 transcription termination factor NusA -
  BJG87_RS07475 (BJG87_07340) rimP 1543977..1544444 (-) 468 WP_017638370.1 ribosome maturation factor RimP -
  BJG87_RS07480 (BJG87_07345) - 1544642..1548952 (-) 4311 WP_096807877.1 PolC-type DNA polymerase III -
  BJG87_RS07485 (BJG87_07350) - 1549238..1550938 (-) 1701 WP_017638372.1 proline--tRNA ligase -
  BJG87_RS07490 (BJG87_07355) rseP 1550958..1552244 (-) 1287 WP_046466613.1 RIP metalloprotease RseP -
  BJG87_RS07495 (BJG87_07360) - 1552487..1553269 (-) 783 WP_017638374.1 phosphatidate cytidylyltransferase -
  BJG87_RS07500 (BJG87_07365) - 1553276..1554046 (-) 771 WP_046466612.1 isoprenyl transferase -
  BJG87_RS07505 (BJG87_07370) frr 1554277..1554831 (-) 555 WP_017638376.1 ribosome recycling factor -
  BJG87_RS07510 (BJG87_07375) pyrH 1554847..1555569 (-) 723 WP_017638377.1 UMP kinase -
  BJG87_RS07515 (BJG87_07380) tsf 1555708..1556586 (-) 879 WP_017638378.1 translation elongation factor Ts -
  BJG87_RS07520 (BJG87_07385) rpsB 1556738..1557526 (-) 789 WP_029055444.1 30S ribosomal protein S2 -
  BJG87_RS07525 (BJG87_07390) codY 1557820..1558593 (-) 774 WP_017638380.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  BJG87_RS07530 (BJG87_07395) hslU 1558617..1560020 (-) 1404 WP_017638381.1 ATP-dependent protease ATPase subunit HslU -
  BJG87_RS07535 (BJG87_07400) hslV 1560111..1560653 (-) 543 WP_017638382.1 ATP-dependent protease subunit HslV -
  BJG87_RS07540 (BJG87_07405) xerC 1560657..1561547 (-) 891 WP_046466611.1 tyrosine recombinase XerC -
  BJG87_RS07545 (BJG87_07410) trmFO 1561713..1563020 (-) 1308 WP_046466610.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BJG87_RS07550 (BJG87_07415) topA 1563133..1565208 (-) 2076 WP_026083538.1 type I DNA topoisomerase -
  BJG87_RS07555 (BJG87_07420) dprA 1565386..1566255 (-) 870 WP_017638386.1 DNA-processing protein DprA Machinery gene
  BJG87_RS07560 (BJG87_07425) sucD 1566480..1567385 (-) 906 WP_017638387.1 succinate--CoA ligase subunit alpha -
  BJG87_RS07565 (BJG87_07430) sucC 1567407..1568573 (-) 1167 WP_017638388.1 ADP-forming succinate--CoA ligase subunit beta -
  BJG87_RS07570 (BJG87_07435) - 1568684..1569451 (-) 768 WP_017638389.1 ribonuclease HII -
  BJG87_RS07575 (BJG87_07440) ylqF 1569444..1570319 (-) 876 WP_029055448.1 ribosome biogenesis GTPase YlqF -
  BJG87_RS07580 (BJG87_07445) - 1570581..1573181 (+) 2601 WP_046466608.1 YfhO family protein -
  BJG87_RS07585 (BJG87_07450) - 1573174..1575783 (+) 2610 WP_046466607.1 YfhO family protein -
  BJG87_RS07590 (BJG87_07455) rplS 1575984..1576334 (-) 351 WP_017637117.1 50S ribosomal protein L19 -
  BJG87_RS07595 (BJG87_07460) trmD 1576440..1577177 (-) 738 WP_017637118.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BJG87_RS07600 (BJG87_07465) rimM 1577177..1577680 (-) 504 WP_017637119.1 ribosome maturation factor RimM -
  BJG87_RS07605 (BJG87_07470) rpsP 1577847..1578122 (-) 276 WP_017637120.1 30S ribosomal protein S16 -
  BJG87_RS07610 (BJG87_07475) ffh 1578721..1580088 (-) 1368 WP_029055452.1 signal recognition particle protein -
  BJG87_RS07615 (BJG87_07480) - 1580108..1580440 (-) 333 WP_046466606.1 putative DNA-binding protein -
  BJG87_RS07620 (BJG87_07485) ftsY 1580427..1581674 (-) 1248 WP_046466605.1 signal recognition particle-docking protein FtsY -
  BJG87_RS07625 (BJG87_07490) smc 1581671..1585240 (-) 3570 WP_046466604.1 chromosome segregation protein SMC -
  BJG87_RS07630 (BJG87_07495) rnc 1585387..1586115 (-) 729 WP_046466603.1 ribonuclease III -
  BJG87_RS07635 (BJG87_07500) - 1586226..1586459 (-) 234 WP_000426914.1 acyl carrier protein -
  BJG87_RS07640 (BJG87_07505) fabG 1586890..1587624 (-) 735 WP_017637126.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  BJG87_RS07645 (BJG87_07510) fabD 1587624..1588544 (-) 921 WP_046466602.1 ACP S-malonyltransferase -
  BJG87_RS07650 (BJG87_07515) plsX 1588537..1589523 (-) 987 WP_070451366.1 phosphate acyltransferase PlsX -
  BJG87_RS07655 (BJG87_07520) fapR 1589516..1590085 (-) 570 WP_017637129.1 transcription factor FapR -
  BJG87_RS07660 (BJG87_07525) recG 1590234..1592282 (-) 2049 WP_017637130.1 ATP-dependent DNA helicase RecG -
  BJG87_RS07665 (BJG87_07530) fakA 1592528..1594177 (-) 1650 WP_017637131.1 fatty acid kinase catalytic subunit FakA -
  BJG87_RS07670 (BJG87_07535) - 1594192..1594566 (-) 375 WP_017637132.1 Asp23/Gls24 family envelope stress response protein -
  BJG87_RS07675 (BJG87_07540) rpmB 1594874..1595062 (+) 189 WP_002435210.1 50S ribosomal protein L28 -
  BJG87_RS07680 (BJG87_07545) - 1595227..1595871 (-) 645 WP_029055459.1 thiamine diphosphokinase -
  BJG87_RS07685 (BJG87_07550) rpe 1595877..1596521 (-) 645 WP_017637134.1 ribulose-phosphate 3-epimerase -
  BJG87_RS07690 (BJG87_07555) rsgA 1596522..1597397 (-) 876 WP_046466600.1 ribosome small subunit-dependent GTPase A -
  BJG87_RS07695 (BJG87_07560) pknB 1597538..1599550 (-) 2013 WP_072291805.1 Stk1 family PASTA domain-containing Ser/Thr kinase -
  BJG87_RS07700 (BJG87_07565) - 1599547..1600290 (-) 744 WP_017637137.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 33585.48 Da        Isoelectric Point: 8.9572

>NTDB_id=198530 BJG87_RS07555 WP_017638386.1 1565386..1566255(-) (dprA) [Staphylococcus pasteuri strain JS7]
MNKHFLLKLYWAQFTTSQIHQLNQYYPQLFHVNDYEQESLLHCWITQYQPRLLPKFLDYKQFQYNEIMKVLRQLDINYIT
YFDKDYPYLLKEIYDYPFVLFYKGNKDILKNDKTLAIVGARKCTNYTSQALNYLFPSFKRAQLTIVSGLAAGADSEAHQQ
ALNAYLPTIAVLGYGHTHHYPKSTFSLRKKIEEQGIVISEYPPFSPIAKYKFPARNRLISGLSKGVLLTEANERSGSRIT
IDCALEQNRNVYVLPGKIFDTSTKGNLLLHQEGATIVVNEHDILQDYSI

Nucleotide


Download         Length: 870 bp        

>NTDB_id=198530 BJG87_RS07555 WP_017638386.1 1565386..1566255(-) (dprA) [Staphylococcus pasteuri strain JS7]
TTGAACAAACATTTTTTACTTAAATTATACTGGGCTCAGTTTACTACTTCACAAATACATCAACTCAACCAATATTATCC
ACAGCTCTTTCATGTTAATGATTATGAACAAGAATCGTTATTACATTGTTGGATTACTCAATACCAGCCACGATTATTGC
CTAAGTTCCTTGACTACAAACAATTTCAATATAATGAAATTATGAAAGTTCTTCGACAATTAGATATCAACTATATCACC
TATTTTGATAAAGATTATCCCTATTTATTAAAAGAAATATATGATTATCCTTTTGTCTTATTTTATAAGGGTAATAAAGA
CATTTTAAAAAACGATAAAACTTTAGCTATAGTTGGTGCTAGAAAGTGTACAAACTATACAAGCCAAGCACTTAATTATC
TTTTTCCTTCATTTAAAAGGGCTCAACTTACAATTGTATCTGGTCTTGCTGCAGGAGCAGATAGTGAGGCACATCAACAA
GCATTGAATGCCTATTTGCCTACAATTGCTGTATTAGGTTATGGACATACACATCATTATCCAAAATCTACTTTTTCACT
TAGAAAGAAAATTGAAGAACAAGGTATTGTTATTAGCGAATATCCACCATTTTCTCCAATAGCGAAATATAAATTTCCTG
CAAGGAACAGATTGATTAGTGGTTTATCAAAAGGTGTTTTATTAACAGAAGCTAATGAAAGAAGTGGAAGTCGTATTACT
ATAGATTGTGCACTTGAACAAAATCGAAATGTCTATGTATTACCAGGAAAAATATTTGATACCTCAACAAAAGGGAATTT
ATTATTGCATCAAGAAGGCGCAACGATTGTTGTGAATGAACATGATATCTTACAAGACTATTCAATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

58.276

100

0.585
  dprA Staphylococcus aureus N315

58.276

100

0.585

Multiple sequence alignment