Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   S101392_RS17195 Genome accession   NZ_CP021921
Coordinates   3317038..3317673 (-) Length   211 a.a.
NCBI ID   WP_088326928.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3312038..3322673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS17175 (S101392_03402) yvzF 3313095..3313280 (-) 186 WP_003221676.1 YvzF family protein -
  S101392_RS17180 (S101392_03403) gerAA 3313398..3314846 (+) 1449 WP_033884692.1 spore germination receptor protein GerAA -
  S101392_RS17185 (S101392_03404) gerAB 3314815..3315912 (+) 1098 WP_088326924.1 spore germination receptor protein GerAB -
  S101392_RS17190 (S101392_03405) gerAC 3315909..3317030 (+) 1122 WP_088326926.1 spore germination receptor protein GerAC -
  S101392_RS17195 (S101392_03406) vraR 3317038..3317673 (-) 636 WP_088326928.1 two-component system response regulator LiaR Regulator
  S101392_RS17200 (S101392_03407) liaS 3317651..3318733 (-) 1083 WP_003228512.1 two-component system sensor histidine kinase LiaS -
  S101392_RS17205 (S101392_03408) liaF 3318730..3319455 (-) 726 WP_003228510.1 LiaRS two-component regulatory system accessory protein LiaF -
  S101392_RS17210 (S101392_03409) liaG 3319489..3320361 (-) 873 WP_003244420.1 DUF4097 domain-containing protein -
  S101392_RS17215 (S101392_03410) liaH 3320462..3321139 (-) 678 WP_049139677.1 stress responsive protein LiaH -
  S101392_RS17220 (S101392_03411) liaI 3321166..3321546 (-) 381 WP_042974723.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23163.88 Da        Isoelectric Point: 5.0208

>NTDB_id=198510 S101392_RS17195 WP_088326928.1 3317038..3317673(-) (vraR) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAYRNHLVK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=198510 S101392_RS17195 WP_088326928.1 3317038..3317673(-) (vraR) [Bacillus subtilis subsp. subtilis strain SRCM101392]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGTGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCTCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTATACGCATATCGAAACCATCTCGTAAAATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

37.946

100

0.403