Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   S101392_RS09125 Genome accession   NZ_CP021921
Coordinates   1750867..1751298 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1745867..1756298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS09105 (S101392_01806) spoVS 1746428..1746688 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  S101392_RS09110 (S101392_01807) tdh 1746954..1747997 (+) 1044 WP_014664024.1 L-threonine 3-dehydrogenase -
  S101392_RS09115 (S101392_01808) kbl 1748010..1749188 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  S101392_RS09120 (S101392_01809) miaB 1749336..1750865 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  S101392_RS09125 (S101392_01810) ymcA 1750867..1751298 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  S101392_RS09130 (S101392_01811) cotE 1751561..1752106 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  S101392_RS09135 (S101392_01812) hexA 1752239..1754815 (+) 2577 WP_088325891.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=198459 S101392_RS09125 WP_003231834.1 1750867..1751298(+) (ymcA) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=198459 S101392_RS09125 WP_003231834.1 1750867..1751298(+) (ymcA) [Bacillus subtilis subsp. subtilis strain SRCM101392]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1