Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BJG88_RS04460 | Genome accession | NZ_CP017459 |
| Coordinates | 973049..973468 (+) | Length | 139 a.a. |
| NCBI ID | WP_096808794.1 | Uniprot ID | A0A291JIA4 |
| Organism | Staphylococcus nepalensis strain JS9 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 968049..978468
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BJG88_RS04435 (BJG88_04360) | - | 969256..969660 (+) | 405 | WP_096808789.1 | F0F1 ATP synthase subunit epsilon | - |
| BJG88_RS04440 (BJG88_04365) | - | 970053..970286 (+) | 234 | WP_096808790.1 | DUF1146 family protein | - |
| BJG88_RS04445 (BJG88_04370) | murA | 970386..971651 (+) | 1266 | WP_096808791.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| BJG88_RS04450 (BJG88_04375) | fabZ | 971709..972149 (+) | 441 | WP_096808792.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| BJG88_RS04455 (BJG88_04380) | - | 972419..972859 (-) | 441 | WP_096808793.1 | YwpF-like family protein | - |
| BJG88_RS04460 (BJG88_04385) | ssb | 973049..973468 (+) | 420 | WP_096808794.1 | single-stranded DNA-binding protein | Machinery gene |
| BJG88_RS04465 (BJG88_04390) | - | 973889..974578 (+) | 690 | WP_108909232.1 | transglycosylase family protein | - |
| BJG88_RS04470 (BJG88_04395) | tenA | 975042..975722 (+) | 681 | WP_096808796.1 | thiaminase II | - |
| BJG88_RS04475 (BJG88_04400) | thiD | 975724..976545 (+) | 822 | WP_096808797.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| BJG88_RS04480 (BJG88_04405) | thiM | 976538..977323 (+) | 786 | WP_096811203.1 | hydroxyethylthiazole kinase | - |
| BJG88_RS04485 (BJG88_04410) | thiE | 977326..977964 (+) | 639 | WP_096808798.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 16058.42 Da Isoelectric Point: 5.8068
>NTDB_id=198442 BJG88_RS04460 WP_096808794.1 973049..973468(+) (ssb) [Staphylococcus nepalensis strain JS9]
MINSIVIVGRLTKDPKIYEKEGNKRATFCVAVSRNYKDKNQNIVCDYLFCKAFGKMANNVEKYISQGSLVGITGQMQSRK
FEKEGQMHFVSELFIETIQFMSPRIKKEAEAFFEPPTIETNEPSISEFHLEENDIYEIV
MINSIVIVGRLTKDPKIYEKEGNKRATFCVAVSRNYKDKNQNIVCDYLFCKAFGKMANNVEKYISQGSLVGITGQMQSRK
FEKEGQMHFVSELFIETIQFMSPRIKKEAEAFFEPPTIETNEPSISEFHLEENDIYEIV
Nucleotide
Download Length: 420 bp
>NTDB_id=198442 BJG88_RS04460 WP_096808794.1 973049..973468(+) (ssb) [Staphylococcus nepalensis strain JS9]
ATGATTAATAGCATTGTCATTGTAGGGCGACTAACAAAGGACCCTAAAATATATGAGAAGGAGGGGAATAAACGAGCCAC
ATTTTGTGTAGCTGTATCTAGAAATTATAAGGATAAAAACCAAAATATTGTTTGTGATTATTTATTTTGTAAAGCTTTTG
GAAAAATGGCTAATAATGTTGAAAAATATATCAGCCAAGGTTCACTTGTTGGTATAACAGGACAGATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCACTTTGTATCAGAGCTTTTTATTGAAACCATTCAATTCATGTCCCCACGTATTAAAAA
GGAAGCAGAAGCATTTTTTGAACCACCGACTATAGAAACAAATGAACCATCTATAAGTGAATTCCATTTAGAAGAAAATG
ATATATATGAAATTGTATAA
ATGATTAATAGCATTGTCATTGTAGGGCGACTAACAAAGGACCCTAAAATATATGAGAAGGAGGGGAATAAACGAGCCAC
ATTTTGTGTAGCTGTATCTAGAAATTATAAGGATAAAAACCAAAATATTGTTTGTGATTATTTATTTTGTAAAGCTTTTG
GAAAAATGGCTAATAATGTTGAAAAATATATCAGCCAAGGTTCACTTGTTGGTATAACAGGACAGATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCACTTTGTATCAGAGCTTTTTATTGAAACCATTCAATTCATGTCCCCACGTATTAAAAA
GGAAGCAGAAGCATTTTTTGAACCACCGACTATAGAAACAAATGAACCATCTATAAGTGAATTCCATTTAGAAGAAAATG
ATATATATGAAATTGTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
72.115 |
74.82 |
0.54 |
| ssb | Staphylococcus aureus MW2 |
71.154 |
74.82 |
0.532 |