Detailed information NTG0198438

Bioinformatically predicted

Overview

• Name: ccrA
• Type: Machinery gene
• Locus tag: BJG88_RS00205
• Genome accession: NZ_CP017459
• Coordinates: 47939..49288 (-)
• Length: 449 a.a.
• NCBI ID: WP_108909055.1
• Uniprot ID: -
• Organism: Staphylococcus nepalensis strain JS9
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	46765..47917	47939..49288	flank	22

Gene organization within MGE regions

Location: 46765..49288

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJG88_RS00205 (BJG88_00200)	ccrA	47939..49288 (-)	1350	WP_108909055.1	cassette chromosome recombinase CcrA	Machinery gene

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 52510.38 Da
• Isoelectric Point: 10.1745

>NTDB_id=198438 BJG88_RS00205 WP_108909055.1 47939..49288(-) (ccrA) [Staphylococcus nepalensis strain JS9]
MKQAMGYLRQSTSKQQSLPAQKQAIKTLAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVSNGIKEKARQGKLITTHAPFGYHYK
RGTFTINKNESPTVIAVFNYYLQGNGYKKITQFLEEDNKLLNRKPYQVRNIIMNPNYCGRVINKYGQYDNMFPSIVSTNM
YEQAQALRSQKQIKRTPSDNQLKQKIKCPYCGSKLTNMTIRKGTHSLRYYVCPRNMNESRFVCDFKGINAQELETSVLTT
CQDFFQNQQLYSKINQTIQKQLKNQRDIETKNTLNHEQLIEKLAKGKIDAETFREQTQLLRQQSKPISSINAFQIKRTFQ
NVIKQRFTLNMLYPYIDEIHITKKKILVGIYFKNEPLNIINQTTQSSIA

Nucleotide

• Length: 1350 bp

>NTDB_id=198438 BJG88_RS00205 WP_108909055.1 47939..49288(-) (ccrA) [Staphylococcus nepalensis strain JS9]
ATGAAACAAGCAATGGGTTACTTACGTCAAAGTACATCAAAACAACAATCACTTCCGGCACAGAAACAAGCCATCAAGAC
ATTGGCTGAAAAACACAATATTCAACACATCACATTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGAAACGGTT
ACCAACAAATTACTGAACTGATTCAACAAGGACAATGTGACGTACTATGTTGCTATCGTCTGAATCGACTTCATCGTAAT
CTAAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTTCATATCTTAAGCGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAATTAGAATCTGATAATATTGGCGAAC
AAGTAAGCAACGGGATAAAAGAAAAAGCGCGTCAGGGTAAATTGATAACTACACACGCCCCCTTTGGTTACCACTACAAA
CGTGGTACATTCACGATAAATAAGAATGAATCACCAACGGTAATTGCCGTATTCAATTACTATCTTCAAGGTAATGGCTA
TAAAAAAATTACACAGTTCTTAGAAGAAGATAACAAACTACTCAACCGGAAACCTTATCAAGTACGTAATATTATTATGA
ATCCCAATTACTGTGGTCGTGTTATCAATAAATATGGACAATATGACAACATGTTTCCGTCTATTGTTTCTACAAATATG
TACGAACAAGCGCAAGCTCTACGATCGCAAAAACAAATCAAACGAACACCTTCAGACAATCAACTCAAACAAAAAATCAA
ATGCCCCTACTGTGGATCTAAACTTACCAATATGACCATTAGAAAAGGGACGCATTCATTACGTTACTATGTCTGCCCAA
GAAATATGAATGAATCACGTTTTGTTTGTGACTTCAAAGGCATCAATGCACAAGAATTAGAAACAAGTGTTTTAACGACT
TGTCAGGACTTCTTTCAGAACCAACAGCTATACTCAAAAATCAACCAAACAATTCAAAAACAACTCAAAAACCAAAGAGA
CATAGAAACCAAAAATACACTAAACCATGAACAGCTGATAGAAAAATTAGCCAAAGGCAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCAATTATTACGTCAACAATCTAAACCTATATCGTCAATCAATGCATTTCAAATTAAAAGGACTTTTCAA
AACGTCATTAAACAACGTTTCACGTTAAACATGTTATACCCTTATATTGATGAAATTCATATCACAAAAAAGAAAATACT
TGTTGGCATTTATTTCAAAAATGAACCTTTAAACATAATCAATCAAACTACGCAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

• Recombinase zinc beta ribbon domain (Zn_ribbon_recom) (262-322)

• Resolvase, N terminal domain (Resolvase) (4-147)

• Recombinase (Recombinase) (169-250)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrA	Staphylococcus aureus COL	83.073	100	0.831
ccrA	Staphylococcus aureus N315	76.169	100	0.762