Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   BIZ52_RS13950 Genome accession   NZ_CP017457
Coordinates   3116929..3117588 (-) Length   219 a.a.
NCBI ID   WP_071984298.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain Detroit-1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3111929..3122588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIZ52_RS13935 (BIZ52_13770) - 3112783..3113442 (+) 660 WP_013101910.1 hypothetical protein -
  BIZ52_RS13940 (BIZ52_13775) lcl 3113610..3115037 (+) 1428 WP_059428048.1 collagen-like adhesin Lcl -
  BIZ52_RS13945 (BIZ52_13780) uvrC 3115061..3116917 (-) 1857 WP_027268581.1 excinuclease ABC subunit UvrC -
  BIZ52_RS13950 (BIZ52_13785) letA 3116929..3117588 (-) 660 WP_071984298.1 two-component system response regulator LetA Regulator
  BIZ52_RS13955 (BIZ52_13790) phhA 3117713..3118531 (-) 819 WP_014844756.1 phenylalanine 4-monooxygenase -
  BIZ52_RS13960 (BIZ52_13795) - 3118975..3120072 (+) 1098 WP_014844757.1 molybdopterin-binding protein -
  BIZ52_RS13965 (BIZ52_13800) cgtA 3120031..3121056 (-) 1026 WP_071984299.1 Obg family GTPase CgtA -
  BIZ52_RS13970 (BIZ52_13805) rpmA 3121274..3121552 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  BIZ52_RS13975 (BIZ52_13810) rplU 3121565..3121876 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24614.62 Da        Isoelectric Point: 5.3852

>NTDB_id=198386 BIZ52_RS13950 WP_071984298.1 3116929..3117588(-) (letA) [Legionella pneumophila subsp. fraseri strain Detroit-1]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIYGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQEPQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=198386 BIZ52_RS13950 WP_071984298.1 3116929..3117588(-) (letA) [Legionella pneumophila subsp. fraseri strain Detroit-1]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGGGAGCAGGCTTTAGCTTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATATATGGGTGGGAAGTGACGCGTCGTTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAATCAGG
GGCTGAAGAAATGGCTGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGCCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACGAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGTTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAACACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.543

100

0.995
  letA Legionella pneumophila strain ERS1305867

99.543

100

0.995

Multiple sequence alignment