Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CJJRM3420_RS03090 Genome accession   NZ_CP017456
Coordinates   592136..592909 (+) Length   257 a.a.
NCBI ID   WP_002857196.1    Uniprot ID   A0AAD2Z1Q2
Organism   Campylobacter jejuni subsp. jejuni str. RM3420     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 587136..597909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJJRM3420_RS03075 (CjjRM3420_0602) - 587985..589919 (-) 1935 WP_002856931.1 RNB domain-containing ribonuclease -
  CJJRM3420_RS03080 (CjjRM3420_0603) ilvC 590038..591060 (+) 1023 WP_002857064.1 ketol-acid reductoisomerase -
  CJJRM3420_RS03085 (CjjRM3420_0604) - 591064..592146 (+) 1083 WP_002869356.1 divergent polysaccharide deacetylase family protein -
  CJJRM3420_RS03090 (CjjRM3420_0605) dprA 592136..592909 (+) 774 WP_002857196.1 DNA-processing protein DprA Machinery gene
  CJJRM3420_RS03095 (CjjRM3420_0606) ruvX 592906..593289 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX -
  CJJRM3420_RS03100 (CjjRM3420_0607) - 593318..594157 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CJJRM3420_RS03105 (CjjRM3420_0608) msrA 594333..594830 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CJJRM3420_RS03110 (CjjRM3420_0609) ppa 594871..595389 (-) 519 WP_002855031.1 inorganic diphosphatase -
  CJJRM3420_RS03115 (CjjRM3420_0610) adk 595399..595977 (-) 579 WP_002855137.1 adenylate kinase -
  CJJRM3420_RS03120 (CjjRM3420_0611) aspS 595974..597725 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28740.54 Da        Isoelectric Point: 7.6510

>NTDB_id=198329 CJJRM3420_RS03090 WP_002857196.1 592136..592909(+) (dprA) [Campylobacter jejuni subsp. jejuni str. RM3420]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SIAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDTNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=198329 CJJRM3420_RS03090 WP_002857196.1 592136..592909(+) (dprA) [Campylobacter jejuni subsp. jejuni str. RM3420]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAACCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGCATGCTTAAAAATGCCCATCTTTGTGTGGTAAGTGGTGGTGCTTTGGGTGTGGATATCACCGCA
AGTATAGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATACAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATCGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.828

99.611

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment