Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   CD007_RS08035 Genome accession   NZ_CP021903
Coordinates   1530354..1531379 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain ge28     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1525354..1536379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS08000 (CD007_08000) ylbE 1525654..1525893 (+) 240 WP_003232231.1 YlbE-like family protein -
  CD007_RS08005 (CD007_08005) ylbF 1526009..1526458 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  CD007_RS08010 (CD007_08010) ylbG 1526513..1526785 (+) 273 WP_009967171.1 YlbG family protein -
  CD007_RS08015 (CD007_08015) rsmD 1527108..1527662 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CD007_RS08020 (CD007_08020) coaD 1527667..1528152 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  CD007_RS08025 (CD007_08025) spoVV 1528163..1529389 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  CD007_RS08030 (CD007_08030) ylbK 1529570..1530352 (+) 783 WP_021479345.1 patatin family protein -
  CD007_RS08035 (CD007_08035) sepM 1530354..1531379 (+) 1026 WP_003245451.1 protease DdcP Regulator
  CD007_RS08040 (CD007_08040) tmcAL 1531396..1532643 (-) 1248 WP_041850860.1 nucleotidyltransferase -
  CD007_RS08045 (CD007_08045) - 1532640..1532825 (-) 186 WP_003232215.1 hypothetical protein -
  CD007_RS08050 (CD007_08050) ylbN 1532853..1533371 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  CD007_RS08055 (CD007_08055) rpmF 1533393..1533572 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  CD007_RS08060 (CD007_08060) gerR 1533718..1534299 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  CD007_RS08065 (CD007_08065) ylbP 1534356..1534838 (-) 483 WP_014476736.1 N-acetyltransferase -
  CD007_RS08070 (CD007_08070) panEA 1534998..1535894 (+) 897 WP_003232206.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=198122 CD007_RS08035 WP_003245451.1 1530354..1531379(+) (sepM) [Bacillus subtilis strain ge28]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=198122 CD007_RS08035 WP_003245451.1 1530354..1531379(+) (sepM) [Bacillus subtilis strain ge28]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402