Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   CD007_RS08005 Genome accession   NZ_CP021903
Coordinates   1526009..1526458 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain ge28     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1521009..1531458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS07965 (CD007_07965) ctaE 1521026..1521649 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  CD007_RS07970 (CD007_07970) ctaF 1521652..1521984 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  CD007_RS07975 (CD007_07975) ctaG 1522011..1522904 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  CD007_RS07980 (CD007_07980) ylbA 1522936..1523298 (-) 363 WP_003232238.1 YugN family protein -
  CD007_RS07985 (CD007_07985) ylbB 1523438..1523884 (+) 447 WP_003221362.1 CBS domain-containing protein -
  CD007_RS07990 (CD007_07990) ylbC 1523968..1525008 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  CD007_RS07995 (CD007_07995) ylbD 1525240..1525638 (+) 399 WP_003232233.1 YlbD family protein -
  CD007_RS08000 (CD007_08000) ylbE 1525654..1525893 (+) 240 WP_003232231.1 YlbE-like family protein -
  CD007_RS08005 (CD007_08005) ylbF 1526009..1526458 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  CD007_RS08010 (CD007_08010) ylbG 1526513..1526785 (+) 273 WP_009967171.1 YlbG family protein -
  CD007_RS08015 (CD007_08015) rsmD 1527108..1527662 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CD007_RS08020 (CD007_08020) coaD 1527667..1528152 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  CD007_RS08025 (CD007_08025) spoVV 1528163..1529389 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  CD007_RS08030 (CD007_08030) ylbK 1529570..1530352 (+) 783 WP_021479345.1 patatin family protein -
  CD007_RS08035 (CD007_08035) sepM 1530354..1531379 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=198121 CD007_RS08005 WP_003221370.1 1526009..1526458(+) (ylbF) [Bacillus subtilis strain ge28]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=198121 CD007_RS08005 WP_003221370.1 1526009..1526458(+) (ylbF) [Bacillus subtilis strain ge28]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment