Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   B195_RS06250 Genome accession   NZ_CP017432
Coordinates   1298996..1299631 (+) Length   211 a.a.
NCBI ID   WP_003442555.1    Uniprot ID   A0A433XV41
Organism   Pseudomonas sp. Lz4W     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1293996..1304631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B195_RS06230 (B195_006140) - 1294085..1295017 (+) 933 WP_003442562.1 ABC transporter ATP-binding protein -
  B195_RS06235 (B195_006145) - 1295014..1295793 (+) 780 WP_003442560.1 ABC transporter permease -
  B195_RS06240 (B195_006150) - 1296012..1296527 (-) 516 WP_003442559.1 DUF2062 domain-containing protein -
  B195_RS06245 (B195_006155) comA 1296661..1298877 (+) 2217 WP_191985165.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B195_RS06250 (B195_006160) exbB 1298996..1299631 (+) 636 WP_003442555.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  B195_RS06255 (B195_006165) - 1299628..1300056 (+) 429 WP_003442553.1 biopolymer transporter ExbD -
  B195_RS06260 (B195_006170) lpxK 1300056..1301066 (+) 1011 WP_003442551.1 tetraacyldisaccharide 4'-kinase -
  B195_RS06265 (B195_006175) - 1301093..1301278 (+) 186 WP_003442540.1 Trm112 family protein -
  B195_RS06270 (B195_006180) kdsB 1301275..1302039 (+) 765 WP_003442538.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  B195_RS06275 (B195_006185) - 1302039..1302503 (+) 465 WP_003442536.1 low molecular weight protein-tyrosine-phosphatase -
  B195_RS06280 (B195_006190) murB 1302500..1303519 (+) 1020 WP_003442534.1 UDP-N-acetylmuramate dehydrogenase -
  B195_RS06285 (B195_006195) - 1303545..1304156 (+) 612 WP_029612302.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22954.25 Da        Isoelectric Point: 7.3613

>NTDB_id=198093 B195_RS06250 WP_003442555.1 1298996..1299631(+) (exbB) [Pseudomonas sp. Lz4W]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPPHLLGQVWVWIKDKQLDKEKLKQLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAILAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDREVDMVGSKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=198093 B195_RS06250 WP_003442555.1 1298996..1299631(+) (exbB) [Pseudomonas sp. Lz4W]
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTGACTCCGCCCCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGGACAAGGAAAAACTCAAGCAATTGCGCGCCGATTCGCCATTGGGTGAAATCCTGGCTGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAATGCATCGAAGAGGCCGCCGCCCGGGTCATTCACGAACTTGAACGTTACCT
CAATGCATTGGGCACCATTGCCGCCATGGCGCCGTTGCTGGGACTGCTGGGCACGGTTCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCTGCGATACTCGCGGGCGGTATTTCCAAAGCGCTGATTACCACTGCT
GCGGGACTGATGGTCGGTATTCCGGCGGTGTTCTTCCATCGCTTCCTGCAGCGCCGGGTCGATGAACTGGTGGTTGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTGCAAGGCGACCGCGAAGTCGACATGGTCGGGAGCAAAGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433XV41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.864

97.63

0.858

Multiple sequence alignment