Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   B195_RS06245 Genome accession   NZ_CP017432
Coordinates   1296661..1298877 (+) Length   738 a.a.
NCBI ID   WP_191985165.1    Uniprot ID   -
Organism   Pseudomonas sp. Lz4W     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1291661..1303877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B195_RS06225 (B195_006135) - 1293315..1293938 (+) 624 WP_003442564.1 glutathione S-transferase family protein -
  B195_RS06230 (B195_006140) - 1294085..1295017 (+) 933 WP_003442562.1 ABC transporter ATP-binding protein -
  B195_RS06235 (B195_006145) - 1295014..1295793 (+) 780 WP_003442560.1 ABC transporter permease -
  B195_RS06240 (B195_006150) - 1296012..1296527 (-) 516 WP_003442559.1 DUF2062 domain-containing protein -
  B195_RS06245 (B195_006155) comA 1296661..1298877 (+) 2217 WP_191985165.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B195_RS06250 (B195_006160) exbB 1298996..1299631 (+) 636 WP_003442555.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  B195_RS06255 (B195_006165) - 1299628..1300056 (+) 429 WP_003442553.1 biopolymer transporter ExbD -
  B195_RS06260 (B195_006170) lpxK 1300056..1301066 (+) 1011 WP_003442551.1 tetraacyldisaccharide 4'-kinase -
  B195_RS06265 (B195_006175) - 1301093..1301278 (+) 186 WP_003442540.1 Trm112 family protein -
  B195_RS06270 (B195_006180) kdsB 1301275..1302039 (+) 765 WP_003442538.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  B195_RS06275 (B195_006185) - 1302039..1302503 (+) 465 WP_003442536.1 low molecular weight protein-tyrosine-phosphatase -
  B195_RS06280 (B195_006190) murB 1302500..1303519 (+) 1020 WP_003442534.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80532.54 Da        Isoelectric Point: 10.5933

>NTDB_id=198092 B195_RS06245 WP_191985165.1 1296661..1298877(+) (comA) [Pseudomonas sp. Lz4W]
MHTGMLALASGLMALRFLPGLPPGGWLLSMLVAGLLLLIFRFYPFGLFLIGLTWACFQGQSALDDRLPGALDGRTLWVEG
RVVGLPRQTDSTVRFELRDARSRHTALPGTIRLGWFGGPPVNSGERWRLAVKLKQPRGLLNPQGFDYQAWLLAQRIGATG
TVKAGQLLEPASHAWRDDLRKRVLHTDANGRAPWLAALVMGDSSGLSGDDWRLLQATGTVHLLVISGQHIGLCAGLIYGL
VAWLARRGWWPRRLPWLPWACGLGFAGALGYGLLAGFEVPVQRACVMLGLVLIWRLRFRHLGVWLPFLLALNGVLIIEPL
ASLMPGFWLSFAAVAVLIFTFSGRLGPWDWHVAWARPQAMIALGLFPMLWILGLPISLSGPLANLVAVPWISLLVLPTAL
LGTLLLPVPWLGETLLWVSGGLLDGLIRGLTLLAGYFSPWLPVTVPLAVWLLSAFGALLLMLPAGVILRPLGWPLVLLAV
FSPREQIPRGQVEVWQLDVGQGLAIVLRTRNHAVLYDAGPKVRDFDQGERVVVPVLRSLGIARLDLMLISHAHADHAGGA
LAVQQEVGALRVIGGELPGLAEPLRAQPCTSGESWEWDGVKFSLWQWSGASDSNQRSCVMQVEAGGERLLLTGDIDARAE
RALLQTSLGVPTRWLQAPHHGSRTSSSVDLLKALAPRVVLISRGHGNSFGHPHPQVLARYQGLGVQILDSAEQGALRFRL
GTFGKAESLRDQPRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=198092 B195_RS06245 WP_191985165.1 1296661..1298877(+) (comA) [Pseudomonas sp. Lz4W]
ATGCATACGGGAATGTTGGCACTGGCGTCGGGTTTGATGGCGTTGCGGTTTTTACCCGGGTTGCCACCGGGCGGGTGGTT
GTTGTCAATGCTGGTTGCGGGACTGTTGCTGCTCATCTTTCGTTTCTATCCGTTTGGGCTGTTCCTGATCGGGCTGACAT
GGGCCTGTTTTCAGGGGCAGAGTGCACTGGATGATCGATTGCCCGGCGCACTGGATGGTCGAACGCTGTGGGTTGAAGGG
CGTGTAGTCGGGTTGCCCCGGCAGACTGATAGCACCGTGCGCTTTGAATTGCGCGATGCCCGCTCGCGGCACACTGCTTT
GCCCGGGACTATCCGGCTGGGCTGGTTCGGCGGGCCGCCGGTCAACAGTGGCGAGCGCTGGCGGCTGGCGGTGAAACTCA
AGCAGCCCCGGGGTCTGCTTAACCCCCAGGGCTTTGATTATCAGGCCTGGTTGCTGGCGCAGCGGATTGGCGCGACTGGA
ACTGTCAAGGCGGGTCAACTGCTCGAACCGGCCAGTCATGCCTGGCGCGACGATTTGCGCAAGCGTGTGCTGCACACCGA
TGCCAATGGGCGAGCGCCGTGGCTCGCCGCGCTGGTCATGGGCGACAGCTCGGGCCTGAGCGGTGACGACTGGAGGCTGC
TGCAGGCAACCGGAACCGTGCACTTGCTGGTGATCTCGGGTCAGCACATTGGGCTGTGTGCCGGACTGATTTACGGCCTG
GTCGCCTGGTTGGCACGCCGTGGCTGGTGGCCGCGGCGTCTGCCATGGCTGCCATGGGCCTGTGGCCTGGGGTTTGCCGG
CGCGCTGGGTTACGGCTTGCTGGCAGGCTTTGAAGTACCGGTTCAGCGGGCATGCGTCATGCTGGGGCTGGTGCTGATAT
GGCGTCTGCGGTTTCGTCATCTGGGGGTTTGGCTACCGTTTTTGCTGGCGCTCAACGGGGTGTTGATCATTGAGCCGCTG
GCCAGTCTGATGCCGGGATTCTGGCTGTCCTTCGCCGCCGTGGCGGTGCTGATTTTCACCTTCAGTGGACGTCTGGGGCC
CTGGGACTGGCACGTGGCATGGGCCCGGCCCCAAGCAATGATTGCCCTGGGGCTGTTTCCGATGCTCTGGATCCTGGGCT
TGCCCATCAGCCTGAGCGGCCCGCTGGCCAATCTGGTGGCTGTGCCGTGGATCAGTCTGCTGGTATTGCCCACGGCACTT
CTGGGCACGTTGCTGTTACCGGTGCCCTGGCTTGGCGAAACCCTGCTTTGGGTGTCAGGCGGTTTGCTTGATGGGTTGAT
CAGGGGGCTGACCTTGCTGGCCGGGTATTTTTCCCCCTGGTTGCCTGTAACAGTTCCCTTGGCAGTGTGGCTGTTGAGTG
CTTTCGGGGCGCTGCTGTTGATGCTGCCGGCAGGCGTGATACTGCGGCCGCTGGGGTGGCCGCTGGTGCTGCTCGCAGTT
TTCAGCCCGCGTGAGCAAATCCCTCGCGGTCAGGTTGAAGTGTGGCAGCTGGATGTGGGGCAGGGGCTGGCCATTGTGCT
GCGCACCCGCAATCACGCCGTGCTTTATGACGCGGGACCGAAAGTCAGGGATTTTGACCAGGGCGAGCGGGTGGTGGTGC
CGGTGTTGCGTTCCCTGGGGATAGCCAGGCTGGACCTGATGCTGATCAGTCACGCGCACGCCGATCACGCCGGCGGGGCC
CTGGCGGTACAGCAGGAAGTCGGTGCCCTGCGGGTCATCGGCGGTGAGTTGCCGGGGTTGGCGGAGCCATTGCGGGCGCA
GCCTTGTACCAGCGGCGAGAGTTGGGAGTGGGATGGCGTGAAGTTTTCGCTCTGGCAGTGGTCAGGGGCGAGTGACAGCA
ATCAGAGGTCCTGTGTGATGCAGGTTGAAGCCGGCGGCGAGCGGCTTCTGCTGACGGGGGATATTGACGCCCGGGCCGAA
CGGGCCTTGTTGCAAACTTCGTTGGGCGTCCCCACCCGCTGGCTGCAAGCCCCGCACCACGGCAGTCGCACGTCATCCTC
GGTGGATTTGCTCAAGGCCCTGGCACCCCGGGTGGTGCTGATCTCCCGGGGCCACGGCAACAGCTTTGGCCATCCGCACC
CTCAAGTGCTGGCGCGCTATCAGGGGTTGGGGGTGCAGATACTGGACAGTGCCGAGCAGGGAGCGCTGCGGTTTCGCTTG
GGCACCTTCGGCAAGGCTGAGAGTCTGCGCGATCAACCCCGTTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Domain of unknown function (DUF4131) (DUF4131)

(19-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.501

97.425

0.589

Multiple sequence alignment