Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CD007_RS05000 Genome accession   NZ_CP021903
Coordinates   966166..966813 (+) Length   215 a.a.
NCBI ID   WP_041851036.1    Uniprot ID   -
Organism   Bacillus subtilis strain ge28     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 961166..971813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS04985 (CD007_04985) glpD 961337..963004 (+) 1668 WP_041851039.1 glycerol-3-phosphate dehydrogenase -
  CD007_RS04990 (CD007_04990) pgcA 963136..964881 (+) 1746 WP_041851038.1 phosphoglucomutase -
  CD007_RS04995 (CD007_04995) yhcY 965030..966169 (+) 1140 WP_041851037.1 two-component system sensor histidine kinase YhcY -
  CD007_RS05000 (CD007_05000) vraR 966166..966813 (+) 648 WP_041851036.1 two-component system response regulator YhcZ Regulator
  CD007_RS05005 (CD007_05005) yhdA 966810..967334 (+) 525 WP_003244703.1 FMN-dependent NADPH-azoreductase -
  CD007_RS05010 (CD007_05010) yhdB 967349..967591 (-) 243 WP_003233373.1 YhdB family protein -
  CD007_RS05015 (CD007_05015) yhdC 967792..968115 (+) 324 WP_041851035.1 YqzG/YhdC family protein -
  CD007_RS05020 (CD007_05020) lytF 968157..969623 (-) 1467 WP_041851034.1 peptidoglycan endopeptidase LytF -
  CD007_RS05025 (CD007_05025) nsrR 969777..970217 (-) 441 WP_014476271.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24190.87 Da        Isoelectric Point: 6.5033

>NTDB_id=198091 CD007_RS05000 WP_041851036.1 966166..966813(+) (vraR) [Bacillus subtilis strain ge28]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSKAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=198091 CD007_RS05000 WP_041851036.1 966166..966813(+) (vraR) [Bacillus subtilis strain ge28]
ATGAAAATTGTAATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACCGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGAGACGAATATCATTGTGCTA
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTAAAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCAAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.053

100

0.4

Multiple sequence alignment