Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BI283_RS12750 Genome accession   NZ_CP017430
Coordinates   2652023..2652541 (-) Length   172 a.a.
NCBI ID   WP_106421151.1    Uniprot ID   -
Organism   Staphylococcus simulans strain MR4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2643611..2654004 2652023..2652541 within 0


Gene organization within MGE regions


Location: 2643611..2654004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI283_RS12715 (BI283_12615) - 2643611..2644366 (-) 756 WP_106421158.1 ABC transporter ATP-binding protein -
  BI283_RS12720 (BI283_12620) - 2644554..2645258 (+) 705 WP_106421146.1 response regulator transcription factor -
  BI283_RS12725 (BI283_12625) - 2645260..2646648 (+) 1389 WP_106421147.1 ATP-binding protein -
  BI283_RS12730 (BI283_12630) - 2647239..2647670 (-) 432 WP_106421148.1 TetR/AcrR family transcriptional regulator -
  BI283_RS12735 (BI283_12635) - 2647686..2649302 (-) 1617 WP_234427235.1 site-specific integrase -
  BI283_RS12740 (BI283_12640) - 2649295..2650695 (-) 1401 WP_106421149.1 tyrosine-type recombinase/integrase -
  BI283_RS12745 (BI283_12645) - 2650701..2651807 (-) 1107 WP_234427243.1 tyrosine-type recombinase/integrase -
  BI283_RS12750 (BI283_12650) ssbA 2652023..2652541 (-) 519 WP_106421151.1 single-stranded DNA-binding protein Machinery gene
  BI283_RS12755 (BI283_12655) rpsF 2652563..2652859 (-) 297 WP_002480322.1 30S ribosomal protein S6 -
  BI283_RS12760 (BI283_12660) - 2653021..2654004 (-) 984 WP_057510724.1 thermonuclease family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19070.73 Da        Isoelectric Point: 5.1953

>NTDB_id=198079 BI283_RS12750 WP_106421151.1 2652023..2652541(-) (ssbA) [Staphylococcus simulans strain MR4]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVSNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHGQQSGGNNQFQIYGQNYGGQQQGQNTSSYQNNNSSNAGQSDNPFANTN
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=198079 BI283_RS12750 WP_106421151.1 2652023..2652541(-) (ssbA) [Staphylococcus simulans strain MR4]
ATGATTAACAGAGTTGTATTAGTAGGCCGTTTAACTAAGGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCGGACTTTATTAACTGTGTTGTTT
TTAGAAAACAAGCAGAAAACGTAAGCAATTACTTGTTTAAAGGAAGTCTTGCAGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGACGCCGTATCTTTGTTACTGAAGTTGTATGTGACAGTGTTCAATTCCTTGAACCAAAATC
ACAAAACCAACGTCATGGCCAACAATCTGGCGGTAATAACCAATTCCAGATCTATGGTCAAAACTATGGTGGTCAACAAC
AAGGACAAAATACGTCATCTTATCAAAACAACAATTCATCCAACGCTGGTCAATCAGACAATCCATTCGCAAATACGAAC
GGACCTATTGACATCAGTGACGATGATTTACCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.221

100

0.634
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.576
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

63.953

0.372
  ssb Glaesserella parasuis strain SC1401

35.359

100

0.372
  ssb Vibrio cholerae strain A1552

34.831

100

0.36

Multiple sequence alignment