Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   S100333_RS05255 Genome accession   NZ_CP021892
Coordinates   1011351..1011998 (+) Length   215 a.a.
NCBI ID   WP_069837394.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1006351..1016998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS05240 (S100333_01074) glpD 1006522..1008189 (+) 1668 WP_088272259.1 glycerol-3-phosphate dehydrogenase -
  S100333_RS05245 (S100333_01075) pgcA 1008321..1010066 (+) 1746 WP_046160373.1 phosphoglucomutase -
  S100333_RS05250 (S100333_01076) yhcY 1010215..1011354 (+) 1140 WP_088272260.1 two-component system sensor histidine kinase YhcY -
  S100333_RS05255 (S100333_01077) vraR 1011351..1011998 (+) 648 WP_069837394.1 two-component system response regulator YhcZ Regulator
  S100333_RS05260 (S100333_01078) yhdA 1011995..1012519 (+) 525 WP_014479291.1 FMN-dependent NADPH-azoreductase -
  S100333_RS05265 (S100333_01079) yhdB 1012534..1012776 (-) 243 WP_003233373.1 YhdB family protein -
  S100333_RS05270 (S100333_01080) yhdC 1012977..1013300 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  S100333_RS05275 (S100333_01081) lytF 1013342..1014802 (-) 1461 WP_014479292.1 peptidoglycan endopeptidase LytF -
  S100333_RS05280 (S100333_01082) nsrR 1014954..1015394 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24148.79 Da        Isoelectric Point: 6.5025

>NTDB_id=197943 S100333_RS05255 WP_069837394.1 1011351..1011998(+) (vraR) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPQTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=197943 S100333_RS05255 WP_069837394.1 1011351..1011998(+) (vraR) [Bacillus subtilis subsp. subtilis strain SRCM100333]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACGGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGCAGACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTAA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.455

97.209

0.442
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.409

Multiple sequence alignment