Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   S100333_RS00250 Genome accession   NZ_CP021892
Coordinates   45663..45953 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0ABU0VDB5
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40663..50953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS00220 (S100333_00043) yaaT 41183..42010 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT Regulator
  S100333_RS00225 (S100333_00044) yabA 42025..42384 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  S100333_RS00230 (S100333_00045) trmNF 42443..43186 (+) 744 WP_041338388.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  S100333_RS00235 (S100333_00046) yazA 43173..43472 (+) 300 WP_069837179.1 GIY-YIG nuclease family protein -
  S100333_RS00240 (S100333_00047) rsmI 43447..44325 (+) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  S100333_RS00250 (S100333_00050) abrB 45663..45953 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  S100333_RS00255 (S100333_00051) metG 46448..48442 (+) 1995 WP_069963935.1 methionine--tRNA ligase -
  S100333_RS00260 (S100333_00052) dayD 48522..49289 (+) 768 WP_014478595.1 TatD family hydrolase -
  S100333_RS00265 (S100333_00053) yabE 49445..50758 (+) 1314 WP_087614203.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=197918 S100333_RS00250 WP_003226760.1 45663..45953(-) (abrB) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=197918 S100333_RS00250 WP_003226760.1 45663..45953(-) (abrB) [Bacillus subtilis subsp. subtilis strain SRCM100333]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment