Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   S100761_RS16900 Genome accession   NZ_CP021889
Coordinates   3166902..3167537 (-) Length   211 a.a.
NCBI ID   WP_046160834.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM100761     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3161902..3172537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100761_RS16880 (S100761_03360) yvzF 3162959..3163144 (-) 186 WP_003228521.1 YvzF family protein -
  S100761_RS16885 (S100761_03361) gerAA 3163262..3164710 (+) 1449 WP_087614703.1 spore germination receptor protein GerAA -
  S100761_RS16890 (S100761_03362) gerAB 3164679..3165776 (+) 1098 WP_041333097.1 spore germination receptor protein GerAB -
  S100761_RS16895 (S100761_03363) gerAC 3165773..3166894 (+) 1122 WP_041333099.1 spore germination receptor protein GerAC -
  S100761_RS16900 (S100761_03364) vraR 3166902..3167537 (-) 636 WP_046160834.1 two-component system response regulator LiaR Regulator
  S100761_RS16905 (S100761_03365) liaS 3167515..3168597 (-) 1083 WP_014480831.1 two-component system sensor histidine kinase LiaS -
  S100761_RS16910 (S100761_03366) liaF 3168594..3169319 (-) 726 WP_014480832.1 LiaRS two-component regulatory system accessory protein LiaF -
  S100761_RS16915 (S100761_03367) liaG 3169353..3170225 (-) 873 WP_046160835.1 DUF4097 domain-containing protein -
  S100761_RS16920 (S100761_03368) liaH 3170326..3171003 (-) 678 WP_046160836.1 stress responsive protein LiaH -
  S100761_RS16925 (S100761_03369) liaI 3171030..3171410 (-) 381 WP_042974723.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23095.72 Da        Isoelectric Point: 5.0163

>NTDB_id=197890 S100761_RS16900 WP_046160834.1 3166902..3167537(-) (vraR) [Bacillus subtilis subsp. subtilis strain SRCM100761]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=197890 S100761_RS16900 WP_046160834.1 3166902..3167537(-) (vraR) [Bacillus subtilis subsp. subtilis strain SRCM100761]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGTTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACGAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

38.117

100

0.403