Detailed information NTG0197693

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: BIU85_RS05550
• Genome accession: NZ_CP017319
• Coordinates: 1279366..1280760 (-)
• Length: 464 a.a.
• NCBI ID: WP_162808570.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. campestris str. CN18
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1261126..1285703	1279366..1280760	within	0

Gene organization within MGE regions

Location: 1261126..1285703

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BIU85_RS05450	-	1261126..1261542 (+)	417	WP_227971334.1	hypothetical protein	-
BIU85_RS23830	-	1261832..1262062 (-)	231	WP_157769280.1	hypothetical protein	-
BIU85_RS05455	-	1262126..1262281 (+)	156	WP_075285405.1	hypothetical protein	-
BIU85_RS05460	-	1262458..1262853 (+)	396	WP_016945003.1	hypothetical protein	-
BIU85_RS05465	-	1262944..1263336 (+)	393	WP_012437593.1	H-NS family nucleoid-associated regulatory protein	-
BIU85_RS05475	glgX	1263861..1265990 (-)	2130	WP_016945001.1	glycogen debranching protein GlgX	-
BIU85_RS05480	rimK	1266483..1267358 (+)	876	WP_016945000.1	30S ribosomal protein S6--L-glutamate ligase	-
BIU85_RS05485	-	1268008..1268685 (+)	678	WP_003490678.1	response regulator transcription factor	-
BIU85_RS05490	-	1268678..1270012 (+)	1335	WP_162808569.1	HAMP domain-containing sensor histidine kinase	-
BIU85_RS05495	-	1270155..1270646 (-)	492	WP_011038220.1	GNAT family N-acetyltransferase	-
BIU85_RS05500	-	1270643..1270933 (-)	291	WP_011038219.1	DUF1778 domain-containing protein	-
BIU85_RS05505	-	1271008..1271409 (-)	402	WP_040940795.1	SymE family type I addiction module toxin	-
BIU85_RS05510	-	1271552..1272660 (+)	1109	WP_087942068.1	IS3 family transposase	-
BIU85_RS05520	coaE	1273145..1273768 (-)	624	WP_075285407.1	dephospho-CoA kinase	-
BIU85_RS05525	-	1273782..1274645 (-)	864	WP_075285408.1	A24 family peptidase	-
BIU85_RS05530	pilC	1274651..1275907 (-)	1257	WP_075285409.1	type II secretion system F family protein	Machinery gene
BIU85_RS05535	-	1276244..1276693 (+)	450	WP_075285410.1	pilin	-
BIU85_RS05540	-	1276809..1277183 (+)	375	WP_269467167.1	pilin	-
BIU85_RS05545	pilB	1277242..1278948 (+)	1707	WP_198407549.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BIU85_RS05550	pilR	1279366..1280760 (-)	1395	WP_162808570.1	sigma-54 dependent transcriptional regulator	Regulator
BIU85_RS05555	-	1280970..1282580 (-)	1611	WP_040940804.1	HAMP domain-containing sensor histidine kinase	-
BIU85_RS05560	sucC	1282814..1283983 (+)	1170	WP_011038209.1	ADP-forming succinate--CoA ligase subunit beta	-
BIU85_RS05565	sucD	1284008..1284883 (+)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
BIU85_RS05570	-	1284987..1285397 (+)	411	WP_029628876.1	DNA-binding protein	-
BIU85_RS05575	-	1285401..1285703 (+)	303	WP_011038207.1	type II toxin-antitoxin system RelE/ParE family toxin	-

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50351.73 Da
• Isoelectric Point: 6.5131

>NTDB_id=197693 BIU85_RS05550 WP_162808570.1 1279366..1280760(-) (pilR) [Xanthomonas campestris pv. campestris str. CN18]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=197693 BIU85_RS05550 WP_162808570.1 1279366..1280760(-) (pilR) [Xanthomonas campestris pv. campestris str. CN18]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAAAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGTCACA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAACCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTACCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGAGCGAGACGCTGGTAGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTACTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTGCTTACCCAGTCCGCGCTCGA
TGCCCTGAACCAATACGGATTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCTGCCTCCTCCGCCCTGCCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAGAACCGCCGCGCAGTTGGGCATCACGTTTCGGGCGC
TACGCTACAAACTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-115)

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.067	99.784	0.629
pilR	Acinetobacter baumannii strain A118	49.138	100	0.491